miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17386 3' -58 NC_004367.1 + 101669 0.66 0.820716
Target:  5'- uGGUUGUuGGUCCgGuGGUGAGCCaucaucuugauuaGAGa -3'
miRNA:   3'- -CCGACAuUCAGGgU-CCGCUCGGg------------CUC- -5'
17386 3' -58 NC_004367.1 + 128644 0.67 0.801718
Target:  5'- uGCUGUggaaaccugcccaguGAcGUCUUAGGUGAGCCCa-- -3'
miRNA:   3'- cCGACA---------------UU-CAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 122825 0.67 0.801718
Target:  5'- uGCUGUggaaaccugcccaguGAcGUCUUAGGUGAGCCCa-- -3'
miRNA:   3'- cCGACA---------------UU-CAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 129974 0.67 0.780172
Target:  5'- gGGuCUGUGGG-CUggCAGGCGcGGCCUGGGc -3'
miRNA:   3'- -CC-GACAUUCaGG--GUCCGC-UCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 127065 0.67 0.780172
Target:  5'- gGGuCUGUGGG-CUggCAGGCGcGGCCUGGGc -3'
miRNA:   3'- -CC-GACAUUCaGG--GUCCGC-UCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 124156 0.67 0.780172
Target:  5'- gGGuCUGUGGG-CUggCAGGCGcGGCCUGGGc -3'
miRNA:   3'- -CC-GACAUUCaGG--GUCCGC-UCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 121247 0.67 0.780172
Target:  5'- gGGuCUGUGGG-CUggCAGGCGcGGCCUGGGc -3'
miRNA:   3'- -CC-GACAUUCaGG--GUCCGC-UCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 120965 0.68 0.74267
Target:  5'- -cCUG-AAGUCUCAGGUGGGCCUa-- -3'
miRNA:   3'- ccGACaUUCAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 129693 0.68 0.74267
Target:  5'- -cCUG-AAGUCUCAGGUGGGCCUa-- -3'
miRNA:   3'- ccGACaUUCAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 126783 0.68 0.74267
Target:  5'- -cCUG-AAGUCUCAGGUGGGCCUa-- -3'
miRNA:   3'- ccGACaUUCAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 123874 0.68 0.74267
Target:  5'- -cCUG-AAGUCUCAGGUGGGCCUa-- -3'
miRNA:   3'- ccGACaUUCAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 125735 0.7 0.617309
Target:  5'- uGCUGUGGaaaccucccagugacGUCUUAGGUGAGCCCa-- -3'
miRNA:   3'- cCGACAUU---------------CAGGGUCCGCUCGGGcuc -5'
17386 3' -58 NC_004367.1 + 23469 0.7 0.603198
Target:  5'- gGGCUG-GAGcCCCAcGGcCGGGCCUGGa -3'
miRNA:   3'- -CCGACaUUCaGGGU-CC-GCUCGGGCUc -5'
17386 3' -58 NC_004367.1 + 23508 0.71 0.533615
Target:  5'- gGGCcugGAGUCCCAcGGcCGGGCCUGGa -3'
miRNA:   3'- -CCGacaUUCAGGGU-CC-GCUCGGGCUc -5'
17386 3' -58 NC_004367.1 + 128406 1.11 0.001273
Target:  5'- cGGCUGUAAGUCCCAGGCGAGCCCGAGg -3'
miRNA:   3'- -CCGACAUUCAGGGUCCGCUCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 125497 1.11 0.001273
Target:  5'- cGGCUGUAAGUCCCAGGCGAGCCCGAGg -3'
miRNA:   3'- -CCGACAUUCAGGGUCCGCUCGGGCUC- -5'
17386 3' -58 NC_004367.1 + 122588 1.11 0.001273
Target:  5'- cGGCUGUAAGUCCCAGGCGAGCCCGAGg -3'
miRNA:   3'- -CCGACAUUCAGGGUCCGCUCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.