Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17386 | 5' | -51.2 | NC_004367.1 | + | 121951 | 0.66 | 0.991993 |
Target: 5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3' miRNA: 3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 23708 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 56989 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 57029 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 57069 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 57109 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 57149 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 57189 | 0.75 | 0.689661 |
Target: 5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 104976 | 0.75 | 0.679134 |
Target: 5'- uGCaCAAGGCCUAAA-AUcUCAGGCCg -3' miRNA: 3'- gCGaGUUCCGGGUUUcUAaAGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 95855 | 0.73 | 0.790396 |
Target: 5'- gGCaUCAAGGCCCGAA---UUCuGGCUg -3' miRNA: 3'- gCG-AGUUCCGGGUUUcuaAAGuCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 43137 | 0.71 | 0.883265 |
Target: 5'- uGCUCGugucuuaccAGGCCCcuAAAGAaucUCAGGCa -3' miRNA: 3'- gCGAGU---------UCCGGG--UUUCUaa-AGUCCGg -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 91710 | 0.7 | 0.916427 |
Target: 5'- gCGgaCAAGGCCCug------CAGGCCa -3' miRNA: 3'- -GCgaGUUCCGGGuuucuaaaGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 124860 | 0.66 | 0.991993 |
Target: 5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3' miRNA: 3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 127769 | 0.66 | 0.991993 |
Target: 5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3' miRNA: 3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 118219 | 0.66 | 0.986432 |
Target: 5'- aGaCUCAaauguagaaGGGCCCAcAGAUUUCAcuCCa -3' miRNA: 3'- gC-GAGU---------UCCGGGUuUCUAAAGUccGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 18065 | 0.67 | 0.982722 |
Target: 5'- gGCUCAGGGCggaacaCCAGGGGUgc--GGCa -3' miRNA: 3'- gCGAGUUCCG------GGUUUCUAaaguCCGg -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 93001 | 0.67 | 0.975791 |
Target: 5'- gGUUCAAGGCCUugcAGAUguuuuUUCAGcCCu -3' miRNA: 3'- gCGAGUUCCGGGuu-UCUA-----AAGUCcGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 23669 | 0.68 | 0.97016 |
Target: 5'- gGaCUCcAGGCCCGGccguGGGgcucCAGGCCc -3' miRNA: 3'- gC-GAGuUCCGGGUU----UCUaaa-GUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 101921 | 0.69 | 0.933265 |
Target: 5'- -uUUCAGGGUCUAAAcGUggCAGGCCu -3' miRNA: 3'- gcGAGUUCCGGGUUUcUAaaGUCCGG- -5' |
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17386 | 5' | -51.2 | NC_004367.1 | + | 43074 | 0.7 | 0.926254 |
Target: 5'- aCGCUCAAGuacaggcuuagguuGUCCAucAGAgc-CAGGCCg -3' miRNA: 3'- -GCGAGUUC--------------CGGGUu-UCUaaaGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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