miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17388 3' -45.7 NC_004367.1 + 133697 0.66 0.999957
Target:  5'- aACaUUUGcUGGUGCCAACGUUU-UUGc -3'
miRNA:   3'- -UGcAAACaACCGCGGUUGUAAAcAAC- -5'
17388 3' -45.7 NC_004367.1 + 84477 0.66 0.999942
Target:  5'- aACGUgaccUGUacGGCGCCA---UUUGUUGg -3'
miRNA:   3'- -UGCAa---ACAa-CCGCGGUuguAAACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133386 0.68 0.999411
Target:  5'- aACGUUUGUUGGCGagGACccUUGa-- -3'
miRNA:   3'- -UGCAAACAACCGCggUUGuaAACaac -5'
17388 3' -45.7 NC_004367.1 + 133162 0.68 0.999411
Target:  5'- aACGUUUGUUGGCGagGACccUUGa-- -3'
miRNA:   3'- -UGCAAACAACCGCggUUGuaAACaac -5'
17388 3' -45.7 NC_004367.1 + 132994 0.68 0.999411
Target:  5'- aACGUUUGUUGGCGagGACccUUGa-- -3'
miRNA:   3'- -UGCAAACAACCGCggUUGuaAACaac -5'
17388 3' -45.7 NC_004367.1 + 106974 0.7 0.997088
Target:  5'- aACGUUUGaUGGCGgaacugCGAgGUUUGUUGg -3'
miRNA:   3'- -UGCAAACaACCGCg-----GUUgUAAACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133059 0.71 0.993393
Target:  5'- ----aUGgUGGUGCCcACAUUUGUUGg -3'
miRNA:   3'- ugcaaACaACCGCGGuUGUAAACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133298 0.72 0.991129
Target:  5'- aACGUUUGUUGGCGaCGACccUUGa-- -3'
miRNA:   3'- -UGCAAACAACCGCgGUUGuaAACaac -5'
17388 3' -45.7 NC_004367.1 + 133210 0.72 0.989789
Target:  5'- aACGUUUGUUGGCGagGACGcUUGa-- -3'
miRNA:   3'- -UGCAAACAACCGCggUUGUaAACaac -5'
17388 3' -45.7 NC_004367.1 + 133211 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133251 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133291 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133427 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133515 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133603 0.75 0.954692
Target:  5'- ----aUGUUGGCGCCAACAaacGUUGc -3'
miRNA:   3'- ugcaaACAACCGCGGUUGUaaaCAAC- -5'
17388 3' -45.7 NC_004367.1 + 133639 0.78 0.859985
Target:  5'- aACGUUUGUUGGUGgCAACAUUccUUGg -3'
miRNA:   3'- -UGCAAACAACCGCgGUUGUAAacAAC- -5'
17388 3' -45.7 NC_004367.1 + 133751 0.8 0.796272
Target:  5'- aACGUUUGUUGGUGCUuuggucACAgUUGUUGg -3'
miRNA:   3'- -UGCAAACAACCGCGGu-----UGUaAACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133474 0.84 0.591676
Target:  5'- aACGUUUGUUaGUGCCAACGUcUGUUGg -3'
miRNA:   3'- -UGCAAACAAcCGCGGUUGUAaACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133579 1.06 0.042616
Target:  5'- aACGUUUGUUGGUGCCAACGUUUGUUGg -3'
miRNA:   3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5'
17388 3' -45.7 NC_004367.1 + 133539 1.07 0.037854
Target:  5'- aACGUUUGUUGGUGCCAACAUUUGUUGg -3'
miRNA:   3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.