miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17389 5' -47 NC_004367.1 + 133382 0.67 0.999742
Target:  5'- cGGCAACGUUUGUUGGcgagGaCCcuugagacuGCGUg- -3'
miRNA:   3'- -CCGUUGCAAACAAUCa---C-GGu--------UGCAga -5'
17389 5' -47 NC_004367.1 + 133158 0.67 0.999742
Target:  5'- cGGCAACGUUUGUUGGcgagGaCCcuugagacuGCGUg- -3'
miRNA:   3'- -CCGUUGCAAACAAUCa---C-GGu--------UGCAga -5'
17389 5' -47 NC_004367.1 + 132990 0.67 0.999742
Target:  5'- cGGCAACGUUUGUUGGcgagGaCCcuugagacuGCGUg- -3'
miRNA:   3'- -CCGUUGCAAACAAUCa---C-GGu--------UGCAga -5'
17389 5' -47 NC_004367.1 + 133809 0.67 0.999479
Target:  5'- uGGCAAUGUUUGUUGGUuuCCGGgGa-- -3'
miRNA:   3'- -CCGUUGCAAACAAUCAc-GGUUgCaga -5'
17389 5' -47 NC_004367.1 + 133294 0.69 0.997429
Target:  5'- cGGCAACGUUUGUUGG---CGACGa-- -3'
miRNA:   3'- -CCGUUGCAAACAAUCacgGUUGCaga -5'
17389 5' -47 NC_004367.1 + 133695 0.71 0.98961
Target:  5'- -cCAACaUUUGcUGGUGCCAACGUUUu -3'
miRNA:   3'- ccGUUGcAAACaAUCACGGUUGCAGA- -5'
17389 5' -47 NC_004367.1 + 133206 0.72 0.982687
Target:  5'- gGGCAACGUUUGUUGGcGagGACG-CUu -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCggUUGCaGA- -5'
17389 5' -47 NC_004367.1 + 133746 0.78 0.792152
Target:  5'- uGGcCAACGUUUGUUGGUGCUuugGUCa -3'
miRNA:   3'- -CC-GUUGCAAACAAUCACGGuugCAGa -5'
17389 5' -47 NC_004367.1 + 133635 0.84 0.506191
Target:  5'- gGGCAACGUUUGUUGGUGgCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCACgGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133430 0.85 0.475635
Target:  5'- gGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133342 0.85 0.475635
Target:  5'- gGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133254 0.85 0.475635
Target:  5'- gGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133038 0.85 0.475635
Target:  5'- gGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133118 0.85 0.446025
Target:  5'- cGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133078 0.85 0.446025
Target:  5'- cGGCAACGUUUGUUGGcGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCaCGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133535 0.95 0.14809
Target:  5'- gGGCAACGUUUGUUGGUGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCACGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 132950 0.95 0.14809
Target:  5'- gGGCAACGUUUGUUGGUGCCAACa--- -3'
miRNA:   3'- -CCGUUGCAAACAAUCACGGUUGcaga -5'
17389 5' -47 NC_004367.1 + 133575 1.07 0.030903
Target:  5'- cGGCAACGUUUGUUGGUGCCAACGUUUg -3'
miRNA:   3'- -CCGUUGCAAACAAUCACGGUUGCAGA- -5'
17389 5' -47 NC_004367.1 + 133470 1.13 0.0132
Target:  5'- cGGCAACGUUUGUUAGUGCCAACGUCUg -3'
miRNA:   3'- -CCGUUGCAAACAAUCACGGUUGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.