miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
174 3' -58.5 AC_000007.1 + 23214 0.66 0.436703
Target:  5'- cUCGCCUucgaucuCAGCgCAGcGGUGcAGCCacaacGCGCa -3'
miRNA:   3'- -AGUGGGu------GUCG-GUC-CCAC-UUGG-----CGCG- -5'
174 3' -58.5 AC_000007.1 + 12048 0.66 0.436703
Target:  5'- aCGCUCACGGCCuu-GUGGA-UGCGCu -3'
miRNA:   3'- aGUGGGUGUCGGuccCACUUgGCGCG- -5'
174 3' -58.5 AC_000007.1 + 16297 0.66 0.426999
Target:  5'- cCGCCCGuCGGCC--GGUGcGACgUGCGCg -3'
miRNA:   3'- aGUGGGU-GUCGGucCCAC-UUG-GCGCG- -5'
174 3' -58.5 AC_000007.1 + 13790 0.66 0.426999
Target:  5'- cUCGCCCAgCAGgCGcGGGcGggUgGUGCg -3'
miRNA:   3'- -AGUGGGU-GUCgGU-CCCaCuuGgCGCG- -5'
174 3' -58.5 AC_000007.1 + 24495 0.66 0.417424
Target:  5'- aCAUCCGCuauGGCgAGGGgcacaucGCUGCGCu -3'
miRNA:   3'- aGUGGGUG---UCGgUCCCacu----UGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 11992 0.66 0.407981
Target:  5'- gCAUCCACaaGGCCGuGaGcGUGAGCCggcgGCGCg -3'
miRNA:   3'- aGUGGGUG--UCGGU-C-C-CACUUGG----CGCG- -5'
174 3' -58.5 AC_000007.1 + 17821 0.66 0.398673
Target:  5'- gCGCgCCGCcGCCGGuGGUGcGCaCGaCGCa -3'
miRNA:   3'- aGUG-GGUGuCGGUC-CCACuUG-GC-GCG- -5'
174 3' -58.5 AC_000007.1 + 18545 0.66 0.394988
Target:  5'- aCACCCagcagaaaccuguGCuGCCAGGGccguccgccguUGuuguaacccgcccuAGCCGCGCg -3'
miRNA:   3'- aGUGGG-------------UGuCGGUCCC-----------AC--------------UUGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 23992 0.67 0.389501
Target:  5'- gUCGCgCCGCAccgcguccgcGCUcgGGGGUGGuuUCGCGCu -3'
miRNA:   3'- -AGUG-GGUGU----------CGG--UCCCACUu-GGCGCG- -5'
174 3' -58.5 AC_000007.1 + 16331 0.67 0.389501
Target:  5'- aUACCCGCGGCCAGccuucGAGCgGCccGCa -3'
miRNA:   3'- aGUGGGUGUCGGUCcca--CUUGgCG--CG- -5'
174 3' -58.5 AC_000007.1 + 8612 0.67 0.38047
Target:  5'- -gACCCGCcgggagaggGGgCAGGGgcacgucgGcGCCGCGCg -3'
miRNA:   3'- agUGGGUG---------UCgGUCCCa-------CuUGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 3707 0.67 0.371579
Target:  5'- gCACCC-CGGCCcauGGGG-GcAugCGCGUu -3'
miRNA:   3'- aGUGGGuGUCGG---UCCCaC-UugGCGCG- -5'
174 3' -58.5 AC_000007.1 + 9065 0.68 0.329287
Target:  5'- gCGCCCGCGauGCCgaaggGGGcGUGGucuacaGCCGCGUc -3'
miRNA:   3'- aGUGGGUGU--CGG-----UCC-CACU------UGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 6675 0.68 0.305667
Target:  5'- aC-CCCAUGGCaUGGGGUGggUgaGCGCg -3'
miRNA:   3'- aGuGGGUGUCG-GUCCCACuuGg-CGCG- -5'
174 3' -58.5 AC_000007.1 + 12151 0.68 0.298088
Target:  5'- gCGCCCuggagGCAGCUGGGGccGGACCuGgGCu -3'
miRNA:   3'- aGUGGG-----UGUCGGUCCCa-CUUGG-CgCG- -5'
174 3' -58.5 AC_000007.1 + 12119 0.69 0.269231
Target:  5'- -uGCCCGugcCAGCCAGGGcccuuUGcaGGCUGUGCa -3'
miRNA:   3'- agUGGGU---GUCGGUCCC-----AC--UUGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 14884 0.7 0.251708
Target:  5'- uUCACCCACAGCCGccugagcaacuuguuGGGcau-CCGCaaGCg -3'
miRNA:   3'- -AGUGGGUGUCGGU---------------CCCacuuGGCG--CG- -5'
174 3' -58.5 AC_000007.1 + 11859 0.71 0.206951
Target:  5'- cCACCUuguCAGCCAGGcucaAGCUGCGCu -3'
miRNA:   3'- aGUGGGu--GUCGGUCCcac-UUGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 6158 0.71 0.196096
Target:  5'- -gGCCCGCGgugauGCCuuugAGGGUG-GCCGCGUc -3'
miRNA:   3'- agUGGGUGU-----CGG----UCCCACuUGGCGCG- -5'
174 3' -58.5 AC_000007.1 + 7308 0.71 0.196096
Target:  5'- cUCACCCACAccucGCUccGGaaGGCCGCGCa -3'
miRNA:   3'- -AGUGGGUGU----CGGucCCacUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.