Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17425 | 5' | -47.8 | NC_004439.1 | + | 3711 | 0.7 | 0.296526 |
Target: 5'- -uCUGGaCcAAAUaaUCACGCCCAGcACCa -3' miRNA: 3'- ccGACC-GuUUUA--AGUGCGGGUUaUGG- -5' |
|||||||
17425 | 5' | -47.8 | NC_004439.1 | + | 2139 | 0.71 | 0.261836 |
Target: 5'- --gUGGCAGAuugCAUggaacaaaGCCCAGUACCa -3' miRNA: 3'- ccgACCGUUUuaaGUG--------CGGGUUAUGG- -5' |
|||||||
17425 | 5' | -47.8 | NC_004439.1 | + | 1227 | 1.15 | 0.000139 |
Target: 5'- uGGCUGGCAAAAUUCACGCCCAAUACCc -3' miRNA: 3'- -CCGACCGUUUUAAGUGCGGGUUAUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home