miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17439 3' -50.7 NC_004453.1 + 2450 0.67 0.769969
Target:  5'- gGGAGAaGugGGACU----GCCGGCa -3'
miRNA:   3'- aCCUCUaCugCUUGAuaacCGGCUGc -5'
17439 3' -50.7 NC_004453.1 + 14123 0.67 0.78067
Target:  5'- --cGGcgGACGAAaUGaUGGCCGACGc -3'
miRNA:   3'- accUCuaCUGCUUgAUaACCGGCUGC- -5'
17439 3' -50.7 NC_004453.1 + 21365 0.67 0.801532
Target:  5'- gGGAGAgagcgaccaUGGCGGAaaagcUUGGCCGAa- -3'
miRNA:   3'- aCCUCU---------ACUGCUUgau--AACCGGCUgc -5'
17439 3' -50.7 NC_004453.1 + 1024 0.67 0.78067
Target:  5'- uUGGAGAagaUGAgcacaaCGGACUGUcGGCUuGACGu -3'
miRNA:   3'- -ACCUCU---ACU------GCUUGAUAaCCGG-CUGC- -5'
17439 3' -50.7 NC_004453.1 + 16472 0.68 0.725688
Target:  5'- gGGAGAaGacaauaccggaGCGGACauuUUGGCCGACc -3'
miRNA:   3'- aCCUCUaC-----------UGCUUGau-AACCGGCUGc -5'
17439 3' -50.7 NC_004453.1 + 17857 0.68 0.714319
Target:  5'- cGGcGAUGGgguaGAGCaUGUUGGCCGcCGa -3'
miRNA:   3'- aCCuCUACUg---CUUG-AUAACCGGCuGC- -5'
17439 3' -50.7 NC_004453.1 + 3613 0.79 0.206265
Target:  5'- ------cGACGAACUGUUGGCCGACc -3'
miRNA:   3'- accucuaCUGCUUGAUAACCGGCUGc -5'
17439 3' -50.7 NC_004453.1 + 6760 1.09 0.001752
Target:  5'- cUGGAGAUGACGAACUAUUGGCCGACGc -3'
miRNA:   3'- -ACCUCUACUGCUUGAUAACCGGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.