miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17440 3' -52.5 NC_004453.1 + 20127 0.66 0.702592
Target:  5'- uGGCgCCAC-ACCAcgcAGCCGgccgGGUUCc-- -3'
miRNA:   3'- -CCG-GGUGuUGGU---UCGGCa---UCAAGacg -5'
17440 3' -52.5 NC_004453.1 + 20381 0.67 0.668092
Target:  5'- uGCCCACGGCCAauuggAGCCcaccgAGgaaucUUUGCg -3'
miRNA:   3'- cCGGGUGUUGGU-----UCGGca---UCa----AGACG- -5'
17440 3' -52.5 NC_004453.1 + 19944 0.67 0.656499
Target:  5'- gGGCCCACAGCgGcuacucgugcGGCUGgcGUUUUa- -3'
miRNA:   3'- -CCGGGUGUUGgU----------UCGGCauCAAGAcg -5'
17440 3' -52.5 NC_004453.1 + 10293 0.68 0.586827
Target:  5'- uGGCCCGCAccACCGGGuuGUuag-CcGCg -3'
miRNA:   3'- -CCGGGUGU--UGGUUCggCAucaaGaCG- -5'
17440 3' -52.5 NC_004453.1 + 9561 0.69 0.563828
Target:  5'- cGGCCUugG-CCGcuguucguaAGCCGUcAGUaagUCUGCc -3'
miRNA:   3'- -CCGGGugUuGGU---------UCGGCA-UCA---AGACG- -5'
17440 3' -52.5 NC_004453.1 + 19060 0.71 0.423071
Target:  5'- aGGCCCACAcagcGCCGcguGCgGUcuaUUCUGCa -3'
miRNA:   3'- -CCGGGUGU----UGGUu--CGgCAuc-AAGACG- -5'
17440 3' -52.5 NC_004453.1 + 20814 0.81 0.094906
Target:  5'- cGGUCCACAACCcGGCCGUgcuGGUguuucaaugCUGCa -3'
miRNA:   3'- -CCGGGUGUUGGuUCGGCA---UCAa--------GACG- -5'
17440 3' -52.5 NC_004453.1 + 7392 1.14 0.000447
Target:  5'- cGGCCCACAACCAAGCCGUAGUUCUGCc -3'
miRNA:   3'- -CCGGGUGUUGGUUCGGCAUCAAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.