miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17441 3' -48 NC_004453.1 + 21320 0.68 0.863786
Target:  5'- cGUGAGCgGCGCGGUGguGuggAAACAu -3'
miRNA:   3'- uCACUCG-CGCGCUGCguUuaaUUUGU- -5'
17441 3' -48 NC_004453.1 + 15270 0.69 0.815672
Target:  5'- aGGcUGGGUGcCGCGACGCGGAgccaGGGCc -3'
miRNA:   3'- -UC-ACUCGC-GCGCUGCGUUUaa--UUUGu -5'
17441 3' -48 NC_004453.1 + 10564 0.69 0.798968
Target:  5'- uAGUGGGCGacgugcgcgaggcaGUGGCGCAAAaaGAGCGc -3'
miRNA:   3'- -UCACUCGCg-------------CGCUGCGUUUaaUUUGU- -5'
17441 3' -48 NC_004453.1 + 5572 0.7 0.772917
Target:  5'- gAGUGAGgGCGCuGGCGUAcAUgccGCAg -3'
miRNA:   3'- -UCACUCgCGCG-CUGCGUuUAauuUGU- -5'
17441 3' -48 NC_004453.1 + 13681 0.73 0.547613
Target:  5'- cGUGuaccuGGUGCGCGACGCGAGcggAAACc -3'
miRNA:   3'- uCAC-----UCGCGCGCUGCGUUUaa-UUUGu -5'
17441 3' -48 NC_004453.1 + 24681 0.75 0.467403
Target:  5'- cGGUGAGCGCGgccUGACGCAAuagaauGCGg -3'
miRNA:   3'- -UCACUCGCGC---GCUGCGUUuaauu-UGU- -5'
17441 3' -48 NC_004453.1 + 10110 1.1 0.00258
Target:  5'- aAGUGAGCGCGCGACGCAAAUUAAACAu -3'
miRNA:   3'- -UCACUCGCGCGCUGCGUUUAAUUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.