miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17443 3' -57.8 NC_004453.1 + 13488 0.66 0.438728
Target:  5'- ---gGUCGGCGGCCgCcgcaGCUgCCGa -3'
miRNA:   3'- guaaCAGCCGCCGG-GuuaaCGGgGGC- -5'
17443 3' -57.8 NC_004453.1 + 19749 0.7 0.255261
Target:  5'- ----aUCGGCGGCCCAGUUGCaguagcaUuuGa -3'
miRNA:   3'- guaacAGCCGCCGGGUUAACGg------GggC- -5'
17443 3' -57.8 NC_004453.1 + 17791 0.72 0.184695
Target:  5'- -cUUGUCGGCGGCCaacaUGCucuaCCCCa -3'
miRNA:   3'- guAACAGCCGCCGGguuaACG----GGGGc -5'
17443 3' -57.8 NC_004453.1 + 10337 0.72 0.16997
Target:  5'- ---cG-CGGCGGCCCAGUUGUCgUCa -3'
miRNA:   3'- guaaCaGCCGCCGGGUUAACGGgGGc -5'
17443 3' -57.8 NC_004453.1 + 17223 1.07 0.000364
Target:  5'- uCAUUGUCGGCGGCCCAAUUGCCCCCGu -3'
miRNA:   3'- -GUAACAGCCGCCGGGUUAACGGGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.