miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17444 5' -54.9 NC_004453.1 + 24567 0.66 0.590528
Target:  5'- cGCCGGuccgucgaugauucaCCGUGUgaacaacauUCGCGA-GGCACGc- -3'
miRNA:   3'- -UGGCC---------------GGCACA---------AGUGCUaCCGUGUug -5'
17444 5' -54.9 NC_004453.1 + 27933 0.67 0.496822
Target:  5'- gUgGGUCGggGUUCAUGuuuucgGGCACAACu -3'
miRNA:   3'- uGgCCGGCa-CAAGUGCua----CCGUGUUG- -5'
17444 5' -54.9 NC_004453.1 + 24754 0.69 0.376313
Target:  5'- gUCGGCgGUGc-CACGucGUGGUACAACa -3'
miRNA:   3'- uGGCCGgCACaaGUGC--UACCGUGUUG- -5'
17444 5' -54.9 NC_004453.1 + 19726 0.7 0.34075
Target:  5'- uGCCGGCCGg--UCAUGGgacGGCuauCGGCg -3'
miRNA:   3'- -UGGCCGGCacaAGUGCUa--CCGu--GUUG- -5'
17444 5' -54.9 NC_004453.1 + 18890 1.1 0.000445
Target:  5'- gACCGGCCGUGUUCACGAUGGCACAACa -3'
miRNA:   3'- -UGGCCGGCACAAGUGCUACCGUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.