miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17446 3' -50.9 NC_004453.1 + 19959 0.66 0.770794
Target:  5'- uAUCUGGCAuugACggggCCcACAGCGGc -3'
miRNA:   3'- -UAGACCGUug-UGaaaaGGcUGUCGCC- -5'
17446 3' -50.9 NC_004453.1 + 17265 0.67 0.714687
Target:  5'- --aUGGCGuGCACauugCCGACGGCGa -3'
miRNA:   3'- uagACCGU-UGUGaaaaGGCUGUCGCc -5'
17446 3' -50.9 NC_004453.1 + 15502 0.68 0.668017
Target:  5'- cGUCUGGagaaGCgg--CCGACGGUGGa -3'
miRNA:   3'- -UAGACCguugUGaaaaGGCUGUCGCC- -5'
17446 3' -50.9 NC_004453.1 + 29966 0.69 0.620719
Target:  5'- -aCUGGCAaaAUACUUcUUCC-AUAGCGGc -3'
miRNA:   3'- uaGACCGU--UGUGAA-AAGGcUGUCGCC- -5'
17446 3' -50.9 NC_004453.1 + 23358 0.7 0.550327
Target:  5'- -cCUGGCua-GCgaaaCCGGCAGCGGc -3'
miRNA:   3'- uaGACCGuugUGaaaaGGCUGUCGCC- -5'
17446 3' -50.9 NC_004453.1 + 30860 0.73 0.409024
Target:  5'- -cCUGGCAGCACUUUUuuGAUGGaCa- -3'
miRNA:   3'- uaGACCGUUGUGAAAAggCUGUC-Gcc -5'
17446 3' -50.9 NC_004453.1 + 19541 0.95 0.014665
Target:  5'- cAUCUGGCAACA-UUUUCCGACAGCGGc -3'
miRNA:   3'- -UAGACCGUUGUgAAAAGGCUGUCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.