miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17446 5' -63 NC_004453.1 + 9093 0.66 0.226574
Target:  5'- -cCCGCUGCgcaacauuuggaaCCGGgcuGCCGaCUGGuCGCg -3'
miRNA:   3'- aaGGCGACG-------------GGCUu--CGGCgGACC-GCG- -5'
17446 5' -63 NC_004453.1 + 14271 0.66 0.215526
Target:  5'- -aCCGCUGCCagaucuGAAGCCcuuugucccCCUGccGCGCa -3'
miRNA:   3'- aaGGCGACGGg-----CUUCGGc--------GGAC--CGCG- -5'
17446 5' -63 NC_004453.1 + 17476 0.66 0.215526
Target:  5'- aUCCaugacGUCCGGAGaCCaCCUGGCGCc -3'
miRNA:   3'- aAGGcga--CGGGCUUC-GGcGGACCGCG- -5'
17446 5' -63 NC_004453.1 + 26251 0.7 0.099786
Target:  5'- uUUgCGCUGUuuGAgcAGCuCGCC-GGCGCg -3'
miRNA:   3'- -AAgGCGACGggCU--UCG-GCGGaCCGCG- -5'
17446 5' -63 NC_004453.1 + 19508 1.07 0.000099
Target:  5'- uUUCCGCUGCCCGAAGCCGCCUGGCGCc -3'
miRNA:   3'- -AAGGCGACGGGCUUCGGCGGACCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.