miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17447 5' -48.6 NC_004453.1 + 10708 0.66 0.9219
Target:  5'- cAAAGugGCCgGCUGA-GUg-GCCACa -3'
miRNA:   3'- -UUUCugUGGgCGAUUgCAaaUGGUGg -5'
17447 5' -48.6 NC_004453.1 + 30906 0.66 0.914545
Target:  5'- aAAAGuGCugCCagguucuuacuugGCguGCGUUUGCCACCc -3'
miRNA:   3'- -UUUC-UGugGG-------------CGauUGCAAAUGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 13597 0.66 0.908233
Target:  5'- --uGACGCgggCCGCcacCGUUUcgGCCACCg -3'
miRNA:   3'- uuuCUGUG---GGCGauuGCAAA--UGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 20052 0.66 0.908233
Target:  5'- -cAGGCGCCCGUcgagAACGgugGCgaGCCa -3'
miRNA:   3'- uuUCUGUGGGCGa---UUGCaaaUGg-UGG- -5'
17447 5' -48.6 NC_004453.1 + 1005 0.66 0.907515
Target:  5'- -cGGACugUCgGCuUGACGUUUcaguggauuuucaGCCACCc -3'
miRNA:   3'- uuUCUGugGG-CG-AUUGCAAA-------------UGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 24567 0.68 0.799845
Target:  5'- gGGAGGCGCCCGCagccacacccauuUGugGUUggaaaguCCACa -3'
miRNA:   3'- -UUUCUGUGGGCG-------------AUugCAAau-----GGUGg -5'
17447 5' -48.6 NC_004453.1 + 13255 0.69 0.787077
Target:  5'- -cAGACGCCCGUcgacgagucuguccUuACGUUUACaaaaGCCu -3'
miRNA:   3'- uuUCUGUGGGCG--------------AuUGCAAAUGg---UGG- -5'
17447 5' -48.6 NC_004453.1 + 29357 0.69 0.768521
Target:  5'- -uGGGCACggaaCGCUGGCGcauucaUUGCCACUg -3'
miRNA:   3'- uuUCUGUGg---GCGAUUGCa-----AAUGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 21245 0.71 0.663965
Target:  5'- --cGugGCuCCGCUcuGAUGUUUccacACCACCg -3'
miRNA:   3'- uuuCugUG-GGCGA--UUGCAAA----UGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 15485 0.72 0.615942
Target:  5'- -uGGACGCCCguGCUAAUGgcguCCACUa -3'
miRNA:   3'- uuUCUGUGGG--CGAUUGCaaauGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 22218 0.72 0.59198
Target:  5'- ---uGCugCCGgaAACGUUgGCCACCu -3'
miRNA:   3'- uuucUGugGGCgaUUGCAAaUGGUGG- -5'
17447 5' -48.6 NC_004453.1 + 20299 1.1 0.002196
Target:  5'- gAAAGACACCCGCUAACGUUUACCACCc -3'
miRNA:   3'- -UUUCUGUGGGCGAUUGCAAAUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.