miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17448 3' -55.7 NC_004453.1 + 16707 0.66 0.581621
Target:  5'- gGAGCCgGCaacccuaccgugGCCCuguacuccGAAACGguGGa -3'
miRNA:   3'- gCUCGGgCG------------CGGGuuu-----CUUUGCguCC- -5'
17448 3' -55.7 NC_004453.1 + 15778 0.66 0.581621
Target:  5'- aCGGGUCUG-GCCauGGGAGGgGCGGGg -3'
miRNA:   3'- -GCUCGGGCgCGGguUUCUUUgCGUCC- -5'
17448 3' -55.7 NC_004453.1 + 9194 0.66 0.570426
Target:  5'- cCGAGCUCGCucccacugccGCCCucaucgaaGAAGAGGgGgAGGg -3'
miRNA:   3'- -GCUCGGGCG----------CGGG--------UUUCUUUgCgUCC- -5'
17448 3' -55.7 NC_004453.1 + 13632 0.66 0.555953
Target:  5'- cCGcGCuCUGCGCCUAcguGGAcgucuucggcgucuGACGCGGGc -3'
miRNA:   3'- -GCuCG-GGCGCGGGUu--UCU--------------UUGCGUCC- -5'
17448 3' -55.7 NC_004453.1 + 21829 0.66 0.537192
Target:  5'- aCGGGCCCuGCGUUUcuuuGGGCGCGGGc -3'
miRNA:   3'- -GCUCGGG-CGCGGGuuucUUUGCGUCC- -5'
17448 3' -55.7 NC_004453.1 + 10567 0.66 0.533904
Target:  5'- uGGGCgaCGUGCgCGAGGcaguggcgcaaaaaGAGCGCGGGa -3'
miRNA:   3'- gCUCGg-GCGCGgGUUUC--------------UUUGCGUCC- -5'
17448 3' -55.7 NC_004453.1 + 21207 0.67 0.504654
Target:  5'- aCGGGCagagaGCGCUCAAGGAGACuCcGGa -3'
miRNA:   3'- -GCUCGgg---CGCGGGUUUCUUUGcGuCC- -5'
17448 3' -55.7 NC_004453.1 + 19575 0.69 0.40334
Target:  5'- aGGGCCaaugGCGCCCAcGGgcGgGguGGg -3'
miRNA:   3'- gCUCGGg---CGCGGGUuUCuuUgCguCC- -5'
17448 3' -55.7 NC_004453.1 + 15525 0.7 0.323942
Target:  5'- gGAGCCgCGUccGCCCGAAGAGGacuugGCAGu -3'
miRNA:   3'- gCUCGG-GCG--CGGGUUUCUUUg----CGUCc -5'
17448 3' -55.7 NC_004453.1 + 13554 0.71 0.300194
Target:  5'- -cGGCCCGCGUcagacgCCGAAGAcguccacguaGGCGCAGa -3'
miRNA:   3'- gcUCGGGCGCG------GGUUUCU----------UUGCGUCc -5'
17448 3' -55.7 NC_004453.1 + 20057 0.71 0.277814
Target:  5'- -cGGCCCagGCGCCCGucGAGaACGguGGc -3'
miRNA:   3'- gcUCGGG--CGCGGGUuuCUU-UGCguCC- -5'
17448 3' -55.7 NC_004453.1 + 21893 1.12 0.00031
Target:  5'- aCGAGCCCGCGCCCAAAGAAACGCAGGg -3'
miRNA:   3'- -GCUCGGGCGCGGGUUUCUUUGCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.