miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17450 5' -51.4 NC_004453.1 + 26250 0.66 0.774694
Target:  5'- uUGCGcuGuUUGAGCAGCuCGCC-GGcGCg -3'
miRNA:   3'- -ACGCuuC-AACUUGUCG-GUGGuCCuUG- -5'
17450 5' -51.4 NC_004453.1 + 10981 0.67 0.695441
Target:  5'- cGCGcuGUcagUGAACggAGCCACUaacaggAGGAGCa -3'
miRNA:   3'- aCGCuuCA---ACUUG--UCGGUGG------UCCUUG- -5'
17450 5' -51.4 NC_004453.1 + 22542 0.67 0.676659
Target:  5'- gGCGAAGUgggugaggGAcucaggcgcuuaaaaACAGCUACCcGGGGAUu -3'
miRNA:   3'- aCGCUUCAa-------CU---------------UGUCGGUGG-UCCUUG- -5'
17450 5' -51.4 NC_004453.1 + 19185 0.69 0.601993
Target:  5'- -aUGggGUUGugguccaugggggucGACggccaacgcacaaaGGCCGCCAGGAACa -3'
miRNA:   3'- acGCuuCAAC---------------UUG--------------UCGGUGGUCCUUG- -5'
17450 5' -51.4 NC_004453.1 + 12588 0.74 0.309776
Target:  5'- cUGCGgcGUUGAuuuuaccuACAGCCGCCugaauaauuugcuGGGAAUa -3'
miRNA:   3'- -ACGCuuCAACU--------UGUCGGUGG-------------UCCUUG- -5'
17450 5' -51.4 NC_004453.1 + 33144 1.11 0.000807
Target:  5'- cUGCGAAGUUGAACAGCCACCAGGAACg -3'
miRNA:   3'- -ACGCUUCAACUUGUCGGUGGUCCUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.