miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17451 3' -55.5 NC_004453.1 + 13685 0.66 0.520599
Target:  5'- cGAGCUCGAGcCGCCgC-CCg-GCGAAg -3'
miRNA:   3'- aCUCGAGUUU-GCGGgGaGGagCGUUU- -5'
17451 3' -55.5 NC_004453.1 + 4597 0.66 0.498519
Target:  5'- aUGAGac--GGCGCCCUUCUUCGguGAg -3'
miRNA:   3'- -ACUCgaguUUGCGGGGAGGAGCguUU- -5'
17451 3' -55.5 NC_004453.1 + 13019 0.71 0.234676
Target:  5'- cGAGCUCu--UGCCgCUCCauUCGCGAAg -3'
miRNA:   3'- aCUCGAGuuuGCGGgGAGG--AGCGUUU- -5'
17451 3' -55.5 NC_004453.1 + 8198 1.06 0.00066
Target:  5'- cUGAGCUCAAACGCCCCUCCUCGCAAAc -3'
miRNA:   3'- -ACUCGAGUUUGCGGGGAGGAGCGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.