miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17453 3' -57 NC_004453.1 + 20898 0.66 0.447025
Target:  5'- -aGGUGUgCAA--GGUGACGCCGUu- -3'
miRNA:   3'- aaCCGCGgGUUuuUCGCUGCGGCGcu -5'
17453 3' -57 NC_004453.1 + 16402 0.66 0.417075
Target:  5'- gUGGCGCucuugggggCCAGGGAGUuguACGCCGUGc -3'
miRNA:   3'- aACCGCG---------GGUUUUUCGc--UGCGGCGCu -5'
17453 3' -57 NC_004453.1 + 13536 0.67 0.361016
Target:  5'- -cGGUGgCCGAAAcgguGGCGGC-CCGCGu -3'
miRNA:   3'- aaCCGCgGGUUUU----UCGCUGcGGCGCu -5'
17453 3' -57 NC_004453.1 + 19582 0.68 0.318467
Target:  5'- aUGGCGCCCAcgggcGGGGUGGgGuuGCa- -3'
miRNA:   3'- aACCGCGGGUu----UUUCGCUgCggCGcu -5'
17453 3' -57 NC_004453.1 + 1360 0.69 0.302535
Target:  5'- aUGGCGCaaAAuaauAGCGACGgCGUGGa -3'
miRNA:   3'- aACCGCGggUUuu--UCGCUGCgGCGCU- -5'
17453 3' -57 NC_004453.1 + 21783 0.69 0.279799
Target:  5'- cUGGgGCCCAAcuGGCGGCgaaaGCUGCc- -3'
miRNA:   3'- aACCgCGGGUUuuUCGCUG----CGGCGcu -5'
17453 3' -57 NC_004453.1 + 13648 0.7 0.265409
Target:  5'- -cGGCGCCCGGAA--UGAC-CCGCGc -3'
miRNA:   3'- aaCCGCGGGUUUUucGCUGcGGCGCu -5'
17453 3' -57 NC_004453.1 + 10587 0.71 0.213795
Target:  5'- gUGGCGCaaAAAGAGCGcgggacgaGCGCCGaCGGc -3'
miRNA:   3'- aACCGCGggUUUUUCGC--------UGCGGC-GCU- -5'
17453 3' -57 NC_004453.1 + 21656 0.73 0.144158
Target:  5'- -cGGCGgCCAucaAAAAGCGGCGCaagGCGGu -3'
miRNA:   3'- aaCCGCgGGU---UUUUCGCUGCGg--CGCU- -5'
17453 3' -57 NC_004453.1 + 11374 0.77 0.082629
Target:  5'- -cGGCGCCa---GAGCGGCGgCGCGAu -3'
miRNA:   3'- aaCCGCGGguuuUUCGCUGCgGCGCU- -5'
17453 3' -57 NC_004453.1 + 14349 1.07 0.000437
Target:  5'- gUUGGCGCCCAAAAAGCGACGCCGCGAa -3'
miRNA:   3'- -AACCGCGGGUUUUUCGCUGCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.