miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17453 5' -61.8 NC_004453.1 + 14384 1.1 0.000106
Target:  5'- uUCUCACCGGCUUACCCGGCCCGGCGCc -3'
miRNA:   3'- -AGAGUGGCCGAAUGGGCCGGGCCGCG- -5'
17453 5' -61.8 NC_004453.1 + 20183 0.66 0.279949
Target:  5'- ---gGCCGGC-UGCgUGGUgUGGCGCc -3'
miRNA:   3'- agagUGGCCGaAUGgGCCGgGCCGCG- -5'
17453 5' -61.8 NC_004453.1 + 26742 0.68 0.216805
Target:  5'- --aCACCGGauugauggGCgaGGCUCGGCGCu -3'
miRNA:   3'- agaGUGGCCgaa-----UGggCCGGGCCGCG- -5'
17453 5' -61.8 NC_004453.1 + 19522 0.69 0.180197
Target:  5'- --aCAgCGGCUuucguuuuccgcUGCCCGaagccGCCUGGCGCc -3'
miRNA:   3'- agaGUgGCCGA------------AUGGGC-----CGGGCCGCG- -5'
17453 5' -61.8 NC_004453.1 + 20081 0.7 0.137429
Target:  5'- gCUgGCCgaggGGCcccagUACCaCGGCCCaGGCGCc -3'
miRNA:   3'- aGAgUGG----CCGa----AUGG-GCCGGG-CCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.