miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17454 3' -58.2 NC_004453.1 + 15064 0.66 0.462906
Target:  5'- aGUCGGCGccuCGaAACUCugCCgCCGCUg -3'
miRNA:   3'- aCAGCUGCcu-GC-UUGGGugGG-GGUGG- -5'
17454 3' -58.2 NC_004453.1 + 14121 0.66 0.452965
Target:  5'- -uUCGGCGGACGAAaugaUgGCCgaCGCCg -3'
miRNA:   3'- acAGCUGCCUGCUUg---GgUGGggGUGG- -5'
17454 3' -58.2 NC_004453.1 + 6907 0.66 0.452965
Target:  5'- cGUCGugGuGgGAGCCCAUCUcguuuuuuCCACUa -3'
miRNA:   3'- aCAGCugCcUgCUUGGGUGGG--------GGUGG- -5'
17454 3' -58.2 NC_004453.1 + 15586 0.66 0.451977
Target:  5'- gUGgaagUGACGGACGuGCCCAaaauagaaaagcgUCCUCGCg -3'
miRNA:   3'- -ACa---GCUGCCUGCuUGGGU-------------GGGGGUGg -5'
17454 3' -58.2 NC_004453.1 + 28511 0.66 0.430551
Target:  5'- aGUaGcCGGACuGAagcaaaguguuguaGCCCACUCUCACCa -3'
miRNA:   3'- aCAgCuGCCUG-CU--------------UGGGUGGGGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 1383 0.67 0.41441
Target:  5'- cGUgGAagGGGCGAGCCCcGCCaagCGCCg -3'
miRNA:   3'- aCAgCUg-CCUGCUUGGG-UGGgg-GUGG- -5'
17454 3' -58.2 NC_004453.1 + 23920 0.67 0.40509
Target:  5'- -cUCGGaagaGGAgGAGCugCCGCCgCCGCCg -3'
miRNA:   3'- acAGCUg---CCUgCUUG--GGUGGgGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 17792 0.67 0.377939
Target:  5'- uUGUCGGCGGccaacAUGcucuacCCCAUCgCCGCCa -3'
miRNA:   3'- -ACAGCUGCC-----UGCuu----GGGUGGgGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 6069 0.68 0.352039
Target:  5'- cGUUGACGGcuuuauacggacACGAGCCCuuUUCCACa -3'
miRNA:   3'- aCAGCUGCC------------UGCUUGGGugGGGGUGg -5'
17454 3' -58.2 NC_004453.1 + 15582 0.7 0.248219
Target:  5'- aGUCcucuuCGGGCGGACgCGgCUCCACCg -3'
miRNA:   3'- aCAGcu---GCCUGCUUGgGUgGGGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 15515 0.72 0.180593
Target:  5'- gGcCGACGGugGAG-CCGCgUCCGCCc -3'
miRNA:   3'- aCaGCUGCCugCUUgGGUGgGGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 1448 0.73 0.166448
Target:  5'- cGUCGGCGcuuGGCgGGGCUCGCCCCUuCCa -3'
miRNA:   3'- aCAGCUGC---CUG-CUUGGGUGGGGGuGG- -5'
17454 3' -58.2 NC_004453.1 + 9180 0.76 0.106622
Target:  5'- aGUCGggGCGGcgccCGAGCUCGCUCCCACUg -3'
miRNA:   3'- aCAGC--UGCCu---GCUUGGGUGGGGGUGG- -5'
17454 3' -58.2 NC_004453.1 + 14539 1.1 0.000258
Target:  5'- gUGUCGACGGACGAACCCACCCCCACCc -3'
miRNA:   3'- -ACAGCUGCCUGCUUGGGUGGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.