Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 25124 | 0.66 | 0.757703 |
|
Target: 5'- ---uUCUG-UUGACGGCUACGAuuGACg -3' miRNA: 3'- ugauAGACgGGCUGCCGAUGUUu-CUG- -5' |
|||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 2655 | 0.66 | 0.735399 |
|
Target: 5'- aACUcGUCUGCCUGccugGGCUGgAguGAGACa -3' miRNA: 3'- -UGA-UAGACGGGCug--CCGAUgU--UUCUG- -5' |
|||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 11218 | 0.66 | 0.712618 |
|
Target: 5'- cGCga-CUGCCuCGACGGCgcuugACAu-GACu -3' miRNA: 3'- -UGauaGACGG-GCUGCCGa----UGUuuCUG- -5' |
|||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 15888 | 0.66 | 0.712618 |
|
Target: 5'- gACU-UCUGgCCGACGaGCgGCGAAuGGCg -3' miRNA: 3'- -UGAuAGACgGGCUGC-CGaUGUUU-CUG- -5' |
|||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 7371 | 0.71 | 0.449221 |
|
Target: 5'- ---uUCUGCCCccgcuuuaACGcGCUACAAAGGCa -3' miRNA: 3'- ugauAGACGGGc-------UGC-CGAUGUUUCUG- -5' |
|||||||
| 17457 | 3' | -51.9 | NC_004453.1 | + | 18193 | 1.09 | 0.001111 |
|
Target: 5'- uACUAUCUGCCCGACGGCUACAAAGACc -3' miRNA: 3'- -UGAUAGACGGGCUGCCGAUGUUUCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home