miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17457 3' -51.9 NC_004453.1 + 25124 0.66 0.757703
Target:  5'- ---uUCUG-UUGACGGCUACGAuuGACg -3'
miRNA:   3'- ugauAGACgGGCUGCCGAUGUUu-CUG- -5'
17457 3' -51.9 NC_004453.1 + 2655 0.66 0.735399
Target:  5'- aACUcGUCUGCCUGccugGGCUGgAguGAGACa -3'
miRNA:   3'- -UGA-UAGACGGGCug--CCGAUgU--UUCUG- -5'
17457 3' -51.9 NC_004453.1 + 11218 0.66 0.712618
Target:  5'- cGCga-CUGCCuCGACGGCgcuugACAu-GACu -3'
miRNA:   3'- -UGauaGACGG-GCUGCCGa----UGUuuCUG- -5'
17457 3' -51.9 NC_004453.1 + 15888 0.66 0.712618
Target:  5'- gACU-UCUGgCCGACGaGCgGCGAAuGGCg -3'
miRNA:   3'- -UGAuAGACgGGCUGC-CGaUGUUU-CUG- -5'
17457 3' -51.9 NC_004453.1 + 7371 0.71 0.449221
Target:  5'- ---uUCUGCCCccgcuuuaACGcGCUACAAAGGCa -3'
miRNA:   3'- ugauAGACGGGc-------UGC-CGAUGUUUCUG- -5'
17457 3' -51.9 NC_004453.1 + 18193 1.09 0.001111
Target:  5'- uACUAUCUGCCCGACGGCUACAAAGACc -3'
miRNA:   3'- -UGAUAGACGGGCUGCCGAUGUUUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.