miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17459 5' -51.5 NC_004453.1 + 15568 0.66 0.799393
Target:  5'- gUCGCUCCguCUGUGcccguGGAAGUgacggacGUGCc -3'
miRNA:   3'- -AGCGAGGguGGCGCu----CCUUUAa------UACG- -5'
17459 5' -51.5 NC_004453.1 + 17908 0.7 0.527226
Target:  5'- aCGCcgCCCAguuaCGCGAGGGAAUggaaauggGCa -3'
miRNA:   3'- aGCGa-GGGUg---GCGCUCCUUUAaua-----CG- -5'
17459 5' -51.5 NC_004453.1 + 22310 0.71 0.493891
Target:  5'- aCGCUCCgCuuaCGCGAGGGAG--AUGUc -3'
miRNA:   3'- aGCGAGG-Gug-GCGCUCCUUUaaUACG- -5'
17459 5' -51.5 NC_004453.1 + 9199 0.72 0.42428
Target:  5'- cUCGCUCCCacuGCCGCccucaucgaagaagaGGGGGAGggcauUGCg -3'
miRNA:   3'- -AGCGAGGG---UGGCG---------------CUCCUUUaau--ACG- -5'
17459 5' -51.5 NC_004453.1 + 19269 1.14 0.000606
Target:  5'- uUCGCUCCCACCGCGAGGAAAUUAUGCa -3'
miRNA:   3'- -AGCGAGGGUGGCGCUCCUUUAAUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.