Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17461 | 3' | -52.7 | NC_004453.1 | + | 9591 | 0.66 | 0.693048 |
Target: 5'- gACGG-UGGgGCUGaUGCAUCUguGGg -3' miRNA: 3'- aUGCUaACUgCGGCaACGUAGGguCC- -5' |
|||||||
17461 | 3' | -52.7 | NC_004453.1 | + | 26294 | 0.68 | 0.565812 |
Target: 5'- cUGCGAUggGACGUCGgcGCGUCCgAa- -3' miRNA: 3'- -AUGCUAa-CUGCGGCaaCGUAGGgUcc -5' |
|||||||
17461 | 3' | -52.7 | NC_004453.1 | + | 24510 | 0.7 | 0.466216 |
Target: 5'- aAUGggUGugGCUGcggGCGccUCCCAGGa -3' miRNA: 3'- aUGCuaACugCGGCaa-CGU--AGGGUCC- -5' |
|||||||
17461 | 3' | -52.7 | NC_004453.1 | + | 25136 | 1.08 | 0.001094 |
Target: 5'- cUACGAUUGACGCCGUUGCAUCCCAGGc -3' miRNA: 3'- -AUGCUAACUGCGGCAACGUAGGGUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home