Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17462 | 3' | -49.5 | NC_004453.1 | + | 13515 | 0.66 | 0.87435 |
Target: 5'- cGACUGaagcgguggccgaaGCGGUGGccgaaACGGUGGCGGCccGCg -3' miRNA: 3'- -CUGAU--------------UGCCAUC-----UGCCGUUGCUGu-UG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 15013 | 0.66 | 0.859599 |
Target: 5'- cGAgUAGCGGUGGAaaCGGgGAUGcGCAAa -3' miRNA: 3'- -CUgAUUGCCAUCU--GCCgUUGC-UGUUg -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 20834 | 0.66 | 0.871807 |
Target: 5'- cGCUGAUGGUAaACGGCGucaccuugcacaccUGACGACc -3' miRNA: 3'- cUGAUUGCCAUcUGCCGUu-------------GCUGUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 19803 | 0.67 | 0.841222 |
Target: 5'- cGCggucgAGCGGUAGGCGGCcaguUGAUAcGCg -3' miRNA: 3'- cUGa----UUGCCAUCUGCCGuu--GCUGU-UG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 9808 | 0.68 | 0.780318 |
Target: 5'- aGugUGGCGG-AGAaagUGGCGGCGAuUAACu -3' miRNA: 3'- -CugAUUGCCaUCU---GCCGUUGCU-GUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 13209 | 0.68 | 0.780318 |
Target: 5'- cACUGAUGGUgguuauAGugGGCugaGGCGGCcGCa -3' miRNA: 3'- cUGAUUGCCA------UCugCCG---UUGCUGuUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 7983 | 0.69 | 0.724515 |
Target: 5'- aACgAACGGcuu-CGGCAACGGCGGCc -3' miRNA: 3'- cUGaUUGCCaucuGCCGUUGCUGUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 6107 | 0.69 | 0.712974 |
Target: 5'- -uCUAACGcGUAaGCGGCGGCGGCu-- -3' miRNA: 3'- cuGAUUGC-CAUcUGCCGUUGCUGuug -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 23360 | 0.69 | 0.70134 |
Target: 5'- uGGCUAGCGaaac-CGGCAGCGGCGAg -3' miRNA: 3'- -CUGAUUGCcaucuGCCGUUGCUGUUg -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 15803 | 0.69 | 0.747261 |
Target: 5'- aGGCggcACGGUGGGCGGUu-UGAgAACg -3' miRNA: 3'- -CUGau-UGCCAUCUGCCGuuGCUgUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 23990 | 0.7 | 0.666021 |
Target: 5'- ---gGAgGGagcGGCGGCGGCGGCAGCu -3' miRNA: 3'- cugaUUgCCau-CUGCCGUUGCUGUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 28246 | 0.72 | 0.547768 |
Target: 5'- -uCUAGCGGUAGAaccgcUGGCAAUGGUGACg -3' miRNA: 3'- cuGAUUGCCAUCU-----GCCGUUGCUGUUG- -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 15871 | 0.73 | 0.490864 |
Target: 5'- cGGCgaaUGGCGGgcgcgcgAGugGGCGGCGGCAGa -3' miRNA: 3'- -CUG---AUUGCCa------UCugCCGUUGCUGUUg -5' |
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17462 | 3' | -49.5 | NC_004453.1 | + | 27063 | 1.11 | 0.00154 |
Target: 5'- gGACUAACGGUAGACGGCAACGACAACa -3' miRNA: 3'- -CUGAUUGCCAUCUGCCGUUGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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