miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17462 3' -49.5 NC_004453.1 + 27063 1.11 0.00154
Target:  5'- gGACUAACGGUAGACGGCAACGACAACa -3'
miRNA:   3'- -CUGAUUGCCAUCUGCCGUUGCUGUUG- -5'
17462 3' -49.5 NC_004453.1 + 15871 0.73 0.490864
Target:  5'- cGGCgaaUGGCGGgcgcgcgAGugGGCGGCGGCAGa -3'
miRNA:   3'- -CUG---AUUGCCa------UCugCCGUUGCUGUUg -5'
17462 3' -49.5 NC_004453.1 + 28246 0.72 0.547768
Target:  5'- -uCUAGCGGUAGAaccgcUGGCAAUGGUGACg -3'
miRNA:   3'- cuGAUUGCCAUCU-----GCCGUUGCUGUUG- -5'
17462 3' -49.5 NC_004453.1 + 23990 0.7 0.666021
Target:  5'- ---gGAgGGagcGGCGGCGGCGGCAGCu -3'
miRNA:   3'- cugaUUgCCau-CUGCCGUUGCUGUUG- -5'
17462 3' -49.5 NC_004453.1 + 23360 0.69 0.70134
Target:  5'- uGGCUAGCGaaac-CGGCAGCGGCGAg -3'
miRNA:   3'- -CUGAUUGCcaucuGCCGUUGCUGUUg -5'
17462 3' -49.5 NC_004453.1 + 6107 0.69 0.712974
Target:  5'- -uCUAACGcGUAaGCGGCGGCGGCu-- -3'
miRNA:   3'- cuGAUUGC-CAUcUGCCGUUGCUGuug -5'
17462 3' -49.5 NC_004453.1 + 7983 0.69 0.724515
Target:  5'- aACgAACGGcuu-CGGCAACGGCGGCc -3'
miRNA:   3'- cUGaUUGCCaucuGCCGUUGCUGUUG- -5'
17462 3' -49.5 NC_004453.1 + 15803 0.69 0.747261
Target:  5'- aGGCggcACGGUGGGCGGUu-UGAgAACg -3'
miRNA:   3'- -CUGau-UGCCAUCUGCCGuuGCUgUUG- -5'
17462 3' -49.5 NC_004453.1 + 9808 0.68 0.780318
Target:  5'- aGugUGGCGG-AGAaagUGGCGGCGAuUAACu -3'
miRNA:   3'- -CugAUUGCCaUCU---GCCGUUGCU-GUUG- -5'
17462 3' -49.5 NC_004453.1 + 13209 0.68 0.780318
Target:  5'- cACUGAUGGUgguuauAGugGGCugaGGCGGCcGCa -3'
miRNA:   3'- cUGAUUGCCA------UCugCCG---UUGCUGuUG- -5'
17462 3' -49.5 NC_004453.1 + 19803 0.67 0.841222
Target:  5'- cGCggucgAGCGGUAGGCGGCcaguUGAUAcGCg -3'
miRNA:   3'- cUGa----UUGCCAUCUGCCGuu--GCUGU-UG- -5'
17462 3' -49.5 NC_004453.1 + 15013 0.66 0.859599
Target:  5'- cGAgUAGCGGUGGAaaCGGgGAUGcGCAAa -3'
miRNA:   3'- -CUgAUUGCCAUCU--GCCgUUGC-UGUUg -5'
17462 3' -49.5 NC_004453.1 + 20834 0.66 0.871807
Target:  5'- cGCUGAUGGUAaACGGCGucaccuugcacaccUGACGACc -3'
miRNA:   3'- cUGAUUGCCAUcUGCCGUu-------------GCUGUUG- -5'
17462 3' -49.5 NC_004453.1 + 13515 0.66 0.87435
Target:  5'- cGACUGaagcgguggccgaaGCGGUGGccgaaACGGUGGCGGCccGCg -3'
miRNA:   3'- -CUGAU--------------UGCCAUC-----UGCCGUUGCUGu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.