miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17469 3' -47.8 NC_004456.1 + 20178 0.66 0.95719
Target:  5'- cCUGACCaguuCAGCCGGuGCGGGCAGc--- -3'
miRNA:   3'- aGACUGG----GUUGGUU-UGUUCGUCuauu -5'
17469 3' -47.8 NC_004456.1 + 20875 0.66 0.95719
Target:  5'- aCUGACCCGGaggCAAACGGcCAGAg-- -3'
miRNA:   3'- aGACUGGGUUg--GUUUGUUcGUCUauu -5'
17469 3' -47.8 NC_004456.1 + 11551 0.66 0.942481
Target:  5'- uUCUGGCUgCAAUCGcGCAAGCAGc--- -3'
miRNA:   3'- -AGACUGG-GUUGGUuUGUUCGUCuauu -5'
17469 3' -47.8 NC_004456.1 + 4486 0.67 0.924827
Target:  5'- cCUGGCucgCCAGCUGGACAaAGCAGGa-- -3'
miRNA:   3'- aGACUG---GGUUGGUUUGU-UCGUCUauu -5'
17469 3' -47.8 NC_004456.1 + 2875 0.67 0.933436
Target:  5'- cCUGGCCaugcaggcaaagcaGGCCAGaACAGGCGGAc-- -3'
miRNA:   3'- aGACUGGg-------------UUGGUU-UGUUCGUCUauu -5'
17469 3' -47.8 NC_004456.1 + 6603 0.68 0.896654
Target:  5'- cCUGugUCuGCCAGGCGAGCAa---- -3'
miRNA:   3'- aGACugGGuUGGUUUGUUCGUcuauu -5'
17469 3' -47.8 NC_004456.1 + 35485 0.69 0.825482
Target:  5'- --aGACCC-GCC-AGCAAGCGGAg-- -3'
miRNA:   3'- agaCUGGGuUGGuUUGUUCGUCUauu -5'
17469 3' -47.8 NC_004456.1 + 6707 1.07 0.004592
Target:  5'- gUCUGACCCAACCAAACAAGCAGAUAAc -3'
miRNA:   3'- -AGACUGGGUUGGUUUGUUCGUCUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.