miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17470 3' -56.2 NC_004456.1 + 7450 1.09 0.00053
Target:  5'- aCUGCAGUUGCCGCCUGAACUGCCUCGu -3'
miRNA:   3'- -GACGUCAACGGCGGACUUGACGGAGC- -5'
17470 3' -56.2 NC_004456.1 + 22307 0.69 0.412488
Target:  5'- gCUGCcgauguGUUGCCGuCCUGGugUGCUg-- -3'
miRNA:   3'- -GACGu-----CAACGGC-GGACUugACGGagc -5'
17470 3' -56.2 NC_004456.1 + 25968 0.67 0.472165
Target:  5'- uUGUcGUUGCUGCCUuGGCUGgCCUgGg -3'
miRNA:   3'- gACGuCAACGGCGGAcUUGAC-GGAgC- -5'
17470 3' -56.2 NC_004456.1 + 36279 0.67 0.49935
Target:  5'- aCUGCAGaggcugaccaagGCCaGCCUGAGCgGCCa-- -3'
miRNA:   3'- -GACGUCaa----------CGG-CGGACUUGaCGGagc -5'
17470 3' -56.2 NC_004456.1 + 20953 0.67 0.514274
Target:  5'- -gGUAGUUGCgGCuCUGGccguUUGCCUCc -3'
miRNA:   3'- gaCGUCAACGgCG-GACUu---GACGGAGc -5'
17470 3' -56.2 NC_004456.1 + 3779 0.66 0.557834
Target:  5'- aUGCA-UUGCCGCUUGGAauugGuCCUCa -3'
miRNA:   3'- gACGUcAACGGCGGACUUga--C-GGAGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.