miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17470 5' -48.6 NC_004456.1 + 28293 0.66 0.951685
Target:  5'- cCCgCGAAGCg--GGAACCGGUcGC-CAu -3'
miRNA:   3'- -GG-GUUUCGuuaCCUUGGUCGuUGaGU- -5'
17470 5' -48.6 NC_004456.1 + 20395 0.66 0.951685
Target:  5'- gCCCGGGGCAu--GAccGCCgAGCAGgUCAa -3'
miRNA:   3'- -GGGUUUCGUuacCU--UGG-UCGUUgAGU- -5'
17470 5' -48.6 NC_004456.1 + 25650 0.66 0.951685
Target:  5'- gCCGAAGCGGcGGuGCUugAGUAugUCAa -3'
miRNA:   3'- gGGUUUCGUUaCCuUGG--UCGUugAGU- -5'
17470 5' -48.6 NC_004456.1 + 28223 0.66 0.946821
Target:  5'- aCUCGauGAGCAAUcGAcgCAGCAGCUCGu -3'
miRNA:   3'- -GGGU--UUCGUUAcCUugGUCGUUGAGU- -5'
17470 5' -48.6 NC_004456.1 + 39093 0.67 0.910999
Target:  5'- aCCAGauGGCAGaGGAGCU-GCAACgUCAa -3'
miRNA:   3'- gGGUU--UCGUUaCCUUGGuCGUUG-AGU- -5'
17470 5' -48.6 NC_004456.1 + 14740 0.67 0.89652
Target:  5'- gCCAAGGUggUG--ACCGGCGAgUCu -3'
miRNA:   3'- gGGUUUCGuuACcuUGGUCGUUgAGu -5'
17470 5' -48.6 NC_004456.1 + 34414 0.68 0.863919
Target:  5'- gCCCuauuAGCucuUGGaAACCGGCAGCg-- -3'
miRNA:   3'- -GGGuu--UCGuu-ACC-UUGGUCGUUGagu -5'
17470 5' -48.6 NC_004456.1 + 19487 0.69 0.836515
Target:  5'- uCCC--AGCGA-GGAgugcGCCAGCuGACUCGg -3'
miRNA:   3'- -GGGuuUCGUUaCCU----UGGUCG-UUGAGU- -5'
17470 5' -48.6 NC_004456.1 + 35630 0.69 0.826869
Target:  5'- gCCAGcGGCAGcGGAGCCGGUAcaGCUUu -3'
miRNA:   3'- gGGUU-UCGUUaCCUUGGUCGU--UGAGu -5'
17470 5' -48.6 NC_004456.1 + 8796 0.7 0.79656
Target:  5'- gCCAcAGCAagGUGGuuAUCAGCAGcCUCAg -3'
miRNA:   3'- gGGUuUCGU--UACCu-UGGUCGUU-GAGU- -5'
17470 5' -48.6 NC_004456.1 + 28001 0.71 0.730958
Target:  5'- aCCAGAGCGgugcuggcaacaAUGGuucaccgguGCuCAGCAACUCGg -3'
miRNA:   3'- gGGUUUCGU------------UACCu--------UG-GUCGUUGAGU- -5'
17470 5' -48.6 NC_004456.1 + 23422 0.71 0.730958
Target:  5'- gCUCAAgcAGUAAugcUGGAGCCAGUAcggaaaGCUCAg -3'
miRNA:   3'- -GGGUU--UCGUU---ACCUUGGUCGU------UGAGU- -5'
17470 5' -48.6 NC_004456.1 + 25535 0.71 0.708025
Target:  5'- aCCGAAGUAAcGGcgaaccgcAACCAGCAGgUCAu -3'
miRNA:   3'- gGGUUUCGUUaCC--------UUGGUCGUUgAGU- -5'
17470 5' -48.6 NC_004456.1 + 20082 0.72 0.696422
Target:  5'- aCCCGGGGUAAaaaGACCGGUGACUCGc -3'
miRNA:   3'- -GGGUUUCGUUaccUUGGUCGUUGAGU- -5'
17470 5' -48.6 NC_004456.1 + 21716 0.72 0.695257
Target:  5'- gCCAAAGCGGUGGuACCAaagccgcGCAgaccuucguACUCAu -3'
miRNA:   3'- gGGUUUCGUUACCuUGGU-------CGU---------UGAGU- -5'
17470 5' -48.6 NC_004456.1 + 31120 0.72 0.695257
Target:  5'- aCCCAGAGUAuuGUGGAcuuucgccauaacGCCAGCAugGCg-- -3'
miRNA:   3'- -GGGUUUCGU--UACCU-------------UGGUCGU--UGagu -5'
17470 5' -48.6 NC_004456.1 + 34410 0.72 0.661236
Target:  5'- gCUCAGaacAGCuGAUGGAG-CAGCGGCUCAa -3'
miRNA:   3'- -GGGUU---UCG-UUACCUUgGUCGUUGAGU- -5'
17470 5' -48.6 NC_004456.1 + 7411 1.12 0.002177
Target:  5'- uCCCAAAGCAAUGGAACCAGCAACUCAg -3'
miRNA:   3'- -GGGUUUCGUUACCUUGGUCGUUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.