miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17471 5' -53.4 NC_004456.1 + 37358 0.66 0.752296
Target:  5'- gGCuGCGGCCUCu---GAGUUGGCCu- -3'
miRNA:   3'- -UGuCGCCGGAGuuggUUUAGCUGGuc -5'
17471 5' -53.4 NC_004456.1 + 30700 0.66 0.730586
Target:  5'- --cGCGGCCacUCAAuCCAAcgUGAUCGGc -3'
miRNA:   3'- uguCGCCGG--AGUU-GGUUuaGCUGGUC- -5'
17471 5' -53.4 NC_004456.1 + 16175 0.66 0.719565
Target:  5'- uCGGCGGCggCGuCCAGGUCGAacguacacucguCCAGa -3'
miRNA:   3'- uGUCGCCGgaGUuGGUUUAGCU------------GGUC- -5'
17471 5' -53.4 NC_004456.1 + 32238 0.67 0.685994
Target:  5'- cCAGCuGCaaggCAGCCAAAccaCGGCCAGa -3'
miRNA:   3'- uGUCGcCGga--GUUGGUUUa--GCUGGUC- -5'
17471 5' -53.4 NC_004456.1 + 34689 0.67 0.64051
Target:  5'- uGCAGCGGCaacgaauaUCAACCccuuGGUCaauCCAGg -3'
miRNA:   3'- -UGUCGCCGg-------AGUUGGu---UUAGcu-GGUC- -5'
17471 5' -53.4 NC_004456.1 + 10832 0.7 0.505825
Target:  5'- aAUAGCgucacGGCCaauaUCAACCAugauAUCGACCAu -3'
miRNA:   3'- -UGUCG-----CCGG----AGUUGGUu---UAGCUGGUc -5'
17471 5' -53.4 NC_004456.1 + 15493 0.74 0.294925
Target:  5'- gGCAGCGGCCuucacuUCAucaacuauuuccugaGCCAcAUCGGCCAc -3'
miRNA:   3'- -UGUCGCCGG------AGU---------------UGGUuUAGCUGGUc -5'
17471 5' -53.4 NC_004456.1 + 14733 0.77 0.200265
Target:  5'- cCAGCGGCC--AACCuuAUCGACCAa -3'
miRNA:   3'- uGUCGCCGGagUUGGuuUAGCUGGUc -5'
17471 5' -53.4 NC_004456.1 + 28201 0.77 0.179118
Target:  5'- gGCGGCGGCCUCuggugucgcAACUAuggCGACCGGu -3'
miRNA:   3'- -UGUCGCCGGAG---------UUGGUuuaGCUGGUC- -5'
17471 5' -53.4 NC_004456.1 + 7799 1.08 0.001331
Target:  5'- uACAGCGGCCUCAACCAAAUCGACCAGc -3'
miRNA:   3'- -UGUCGCCGGAGUUGGUUUAGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.