miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17473 3' -46.8 NC_004456.1 + 15808 0.7 0.903428
Target:  5'- gAAGUCgACUAcgaAGugGAgcGAGCCCUg -3'
miRNA:   3'- gUUCAGgUGAU---UUugCUguUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 8490 0.66 0.986712
Target:  5'- -cAGUCCGCUGucuguuGCGaaaGCAgcGCCaCCa -3'
miRNA:   3'- guUCAGGUGAUuu----UGC---UGUuuCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 9326 0.66 0.984754
Target:  5'- -uGGUgCGCUAcuGCGAaAAAGCCUUg -3'
miRNA:   3'- guUCAgGUGAUuuUGCUgUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 28175 0.66 0.982583
Target:  5'- uCGAGUCgGCaaccgcGACGACAGuuggcggcGGCCUCu -3'
miRNA:   3'- -GUUCAGgUGauu---UUGCUGUU--------UCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 5490 0.66 0.977554
Target:  5'- aAAG-CCGCaAAAGCGGCcuucacagucauAGAGUCCCc -3'
miRNA:   3'- gUUCaGGUGaUUUUGCUG------------UUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 32881 0.66 0.977554
Target:  5'- uCAAGcUCCAagccauCGACAAAaugagcGCCCCg -3'
miRNA:   3'- -GUUC-AGGUgauuuuGCUGUUU------CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 6364 0.67 0.968116
Target:  5'- gCAAGUCUACcaua--GACAgcGCCCUu -3'
miRNA:   3'- -GUUCAGGUGauuuugCUGUuuCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 18533 0.68 0.956154
Target:  5'- gAGGUCCAgUcguuuuACGGCuugcAAGCCCUg -3'
miRNA:   3'- gUUCAGGUgAuuu---UGCUGu---UUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 16441 0.68 0.951567
Target:  5'- aAAGUCCAgcGAGACGAUGAcaCCCUg -3'
miRNA:   3'- gUUCAGGUgaUUUUGCUGUUucGGGG- -5'
17473 3' -46.8 NC_004456.1 + 11926 0.68 0.951091
Target:  5'- gGGGUCCGCUGguuccuuggugugGAGCGAau-GGCCaCUa -3'
miRNA:   3'- gUUCAGGUGAU-------------UUUGCUguuUCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 38092 0.68 0.946669
Target:  5'- uCAGGUUgAUU---ACGAUAAAGaCCCCg -3'
miRNA:   3'- -GUUCAGgUGAuuuUGCUGUUUC-GGGG- -5'
17473 3' -46.8 NC_004456.1 + 12404 0.68 0.940917
Target:  5'- aAAG-CCGcCUAGAGCGGuuuuuugcguuucCAGGGCCCUg -3'
miRNA:   3'- gUUCaGGU-GAUUUUGCU-------------GUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 3088 0.7 0.902696
Target:  5'- ----aCCACUGAGGCcccGGCAguacguagcauuuGAGCCCCu -3'
miRNA:   3'- guucaGGUGAUUUUG---CUGU-------------UUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 19414 0.7 0.901224
Target:  5'- ---cUCCGCUGGcuACGGCAAAauccauaaaccaacGCCCCa -3'
miRNA:   3'- guucAGGUGAUUu-UGCUGUUU--------------CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 12581 0.7 0.880131
Target:  5'- cCGAuGUCgugaGCUGGAAUGACuu-GCCCCu -3'
miRNA:   3'- -GUU-CAGg---UGAUUUUGCUGuuuCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 31186 0.72 0.795195
Target:  5'- gAAGUCCACc-GGACGGCAcAGGCCa- -3'
miRNA:   3'- gUUCAGGUGauUUUGCUGU-UUCGGgg -5'
17473 3' -46.8 NC_004456.1 + 22332 0.74 0.717615
Target:  5'- gCAGGUcaaaaCCACgucccauGCGGCGAGGCUCCa -3'
miRNA:   3'- -GUUCA-----GGUGauuu---UGCUGUUUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 27612 0.74 0.694344
Target:  5'- uGAGggCCACcgauAACGGCAGAGCCgCCc -3'
miRNA:   3'- gUUCa-GGUGauu-UUGCUGUUUCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 16102 0.76 0.564173
Target:  5'- aUAGGUCUGCUAGGGCuucguACAgcAAGCCCCg -3'
miRNA:   3'- -GUUCAGGUGAUUUUGc----UGU--UUCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 42020 0.66 0.984754
Target:  5'- aAGGUCUcgcaacCUGAuACGGuuCAAGGCCCUg -3'
miRNA:   3'- gUUCAGGu-----GAUUuUGCU--GUUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.