Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17473 | 3' | -46.8 | NC_004456.1 | + | 15808 | 0.7 | 0.903428 |
Target: 5'- gAAGUCgACUAcgaAGugGAgcGAGCCCUg -3' miRNA: 3'- gUUCAGgUGAU---UUugCUguUUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 8490 | 0.66 | 0.986712 |
Target: 5'- -cAGUCCGCUGucuguuGCGaaaGCAgcGCCaCCa -3' miRNA: 3'- guUCAGGUGAUuu----UGC---UGUuuCGG-GG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 9326 | 0.66 | 0.984754 |
Target: 5'- -uGGUgCGCUAcuGCGAaAAAGCCUUg -3' miRNA: 3'- guUCAgGUGAUuuUGCUgUUUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 28175 | 0.66 | 0.982583 |
Target: 5'- uCGAGUCgGCaaccgcGACGACAGuuggcggcGGCCUCu -3' miRNA: 3'- -GUUCAGgUGauu---UUGCUGUU--------UCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 5490 | 0.66 | 0.977554 |
Target: 5'- aAAG-CCGCaAAAGCGGCcuucacagucauAGAGUCCCc -3' miRNA: 3'- gUUCaGGUGaUUUUGCUG------------UUUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 32881 | 0.66 | 0.977554 |
Target: 5'- uCAAGcUCCAagccauCGACAAAaugagcGCCCCg -3' miRNA: 3'- -GUUC-AGGUgauuuuGCUGUUU------CGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 6364 | 0.67 | 0.968116 |
Target: 5'- gCAAGUCUACcaua--GACAgcGCCCUu -3' miRNA: 3'- -GUUCAGGUGauuuugCUGUuuCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 18533 | 0.68 | 0.956154 |
Target: 5'- gAGGUCCAgUcguuuuACGGCuugcAAGCCCUg -3' miRNA: 3'- gUUCAGGUgAuuu---UGCUGu---UUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 16441 | 0.68 | 0.951567 |
Target: 5'- aAAGUCCAgcGAGACGAUGAcaCCCUg -3' miRNA: 3'- gUUCAGGUgaUUUUGCUGUUucGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 11926 | 0.68 | 0.951091 |
Target: 5'- gGGGUCCGCUGguuccuuggugugGAGCGAau-GGCCaCUa -3' miRNA: 3'- gUUCAGGUGAU-------------UUUGCUguuUCGG-GG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 38092 | 0.68 | 0.946669 |
Target: 5'- uCAGGUUgAUU---ACGAUAAAGaCCCCg -3' miRNA: 3'- -GUUCAGgUGAuuuUGCUGUUUC-GGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 12404 | 0.68 | 0.940917 |
Target: 5'- aAAG-CCGcCUAGAGCGGuuuuuugcguuucCAGGGCCCUg -3' miRNA: 3'- gUUCaGGU-GAUUUUGCU-------------GUUUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 3088 | 0.7 | 0.902696 |
Target: 5'- ----aCCACUGAGGCcccGGCAguacguagcauuuGAGCCCCu -3' miRNA: 3'- guucaGGUGAUUUUG---CUGU-------------UUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 19414 | 0.7 | 0.901224 |
Target: 5'- ---cUCCGCUGGcuACGGCAAAauccauaaaccaacGCCCCa -3' miRNA: 3'- guucAGGUGAUUu-UGCUGUUU--------------CGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 12581 | 0.7 | 0.880131 |
Target: 5'- cCGAuGUCgugaGCUGGAAUGACuu-GCCCCu -3' miRNA: 3'- -GUU-CAGg---UGAUUUUGCUGuuuCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 31186 | 0.72 | 0.795195 |
Target: 5'- gAAGUCCACc-GGACGGCAcAGGCCa- -3' miRNA: 3'- gUUCAGGUGauUUUGCUGU-UUCGGgg -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 22332 | 0.74 | 0.717615 |
Target: 5'- gCAGGUcaaaaCCACgucccauGCGGCGAGGCUCCa -3' miRNA: 3'- -GUUCA-----GGUGauuu---UGCUGUUUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 27612 | 0.74 | 0.694344 |
Target: 5'- uGAGggCCACcgauAACGGCAGAGCCgCCc -3' miRNA: 3'- gUUCa-GGUGauu-UUGCUGUUUCGG-GG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 16102 | 0.76 | 0.564173 |
Target: 5'- aUAGGUCUGCUAGGGCuucguACAgcAAGCCCCg -3' miRNA: 3'- -GUUCAGGUGAUUUUGc----UGU--UUCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 42020 | 0.66 | 0.984754 |
Target: 5'- aAGGUCUcgcaacCUGAuACGGuuCAAGGCCCUg -3' miRNA: 3'- gUUCAGGu-----GAUUuUGCU--GUUUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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