miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17474 3' -51.8 NC_004456.1 + 15279 1.04 0.002702
Target:  5'- uAAACGGAUGCACAUAAGCAGCUGGCg -3'
miRNA:   3'- -UUUGCCUACGUGUAUUCGUCGACCGg -5'
17474 3' -51.8 NC_004456.1 + 32752 0.71 0.467669
Target:  5'- uGAGCuGAUGCGCu--GGCgagAGUUGGCCa -3'
miRNA:   3'- -UUUGcCUACGUGuauUCG---UCGACCGG- -5'
17474 3' -51.8 NC_004456.1 + 36192 0.71 0.489312
Target:  5'- --gUGGAUGC-CAUGGccGCucaGGCUGGCCu -3'
miRNA:   3'- uuuGCCUACGuGUAUU--CG---UCGACCGG- -5'
17474 3' -51.8 NC_004456.1 + 16793 0.7 0.522618
Target:  5'- -uGCGGAcaagGCACAUGaaaguAGC-GCUGGUCu -3'
miRNA:   3'- uuUGCCUa---CGUGUAU-----UCGuCGACCGG- -5'
17474 3' -51.8 NC_004456.1 + 19248 0.7 0.533917
Target:  5'- ---aGGAUGCcauagcccuuaGCAaugcUAAGCAGCUGGUa -3'
miRNA:   3'- uuugCCUACG-----------UGU----AUUCGUCGACCGg -5'
17474 3' -51.8 NC_004456.1 + 33145 0.69 0.62662
Target:  5'- -uGCGGcaGCAgAaAGGCAGgUGGCCg -3'
miRNA:   3'- uuUGCCuaCGUgUaUUCGUCgACCGG- -5'
17474 3' -51.8 NC_004456.1 + 35868 0.68 0.650068
Target:  5'- cAACuGAUGCAU--GAGCAGCaGGCg -3'
miRNA:   3'- uUUGcCUACGUGuaUUCGUCGaCCGg -5'
17474 3' -51.8 NC_004456.1 + 12951 0.68 0.685067
Target:  5'- aAAACGGA-GUGCAUAAGCgccaucuaaAGaaGGCCu -3'
miRNA:   3'- -UUUGCCUaCGUGUAUUCG---------UCgaCCGG- -5'
17474 3' -51.8 NC_004456.1 + 3196 0.67 0.708134
Target:  5'- -cACGGAUGCcuGCAUcGGCAccuGCUGaGCa -3'
miRNA:   3'- uuUGCCUACG--UGUAuUCGU---CGAC-CGg -5'
17474 3' -51.8 NC_004456.1 + 14074 0.67 0.708134
Target:  5'- uGGCGGAU-CAUuucAAGCAuCUGGCCg -3'
miRNA:   3'- uUUGCCUAcGUGua-UUCGUcGACCGG- -5'
17474 3' -51.8 NC_004456.1 + 41363 0.67 0.730863
Target:  5'- -cAUGGAgggcaaaaUGCACGUAgcuaAGCAaauGCUGGCa -3'
miRNA:   3'- uuUGCCU--------ACGUGUAU----UCGU---CGACCGg -5'
17474 3' -51.8 NC_004456.1 + 4270 0.67 0.742065
Target:  5'- gAAACug--GCACAgcagAacaagaccaccAGCAGCUGGCCa -3'
miRNA:   3'- -UUUGccuaCGUGUa---U-----------UCGUCGACCGG- -5'
17474 3' -51.8 NC_004456.1 + 23174 0.66 0.795913
Target:  5'- cAGCGG--GCGCAagggcgguuuacUGAGCuGCUGcGCCa -3'
miRNA:   3'- uUUGCCuaCGUGU------------AUUCGuCGAC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.