miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17474 5' -51.3 NC_004456.1 + 41254 0.66 0.857138
Target:  5'- uGCGGCCcACCagcuccGCACcgaguucuGCCAGCAu -3'
miRNA:   3'- -CGCCGGuUGGaaua--CGUG--------UGGUUGUc -5'
17474 5' -51.3 NC_004456.1 + 18951 0.66 0.857138
Target:  5'- aGCaGCUggAACCaug-GCGCACCAGCGu -3'
miRNA:   3'- -CGcCGG--UUGGaauaCGUGUGGUUGUc -5'
17474 5' -51.3 NC_004456.1 + 23725 0.66 0.839099
Target:  5'- cCGGgCggUgaUGUGC-CACCGGCAGa -3'
miRNA:   3'- cGCCgGuuGgaAUACGuGUGGUUGUC- -5'
17474 5' -51.3 NC_004456.1 + 32823 0.66 0.839099
Target:  5'- aUGGCCAACuCUcgccaGCGCAUCAGCu- -3'
miRNA:   3'- cGCCGGUUG-GAaua--CGUGUGGUUGuc -5'
17474 5' -51.3 NC_004456.1 + 14798 0.66 0.820095
Target:  5'- cCGGUCAccACCUUG-GCaACAUCGACAa -3'
miRNA:   3'- cGCCGGU--UGGAAUaCG-UGUGGUUGUc -5'
17474 5' -51.3 NC_004456.1 + 42392 0.67 0.800214
Target:  5'- uCGG-CAACCUgugGUGCACcguCAACAGa -3'
miRNA:   3'- cGCCgGUUGGAa--UACGUGug-GUUGUC- -5'
17474 5' -51.3 NC_004456.1 + 4356 0.69 0.702593
Target:  5'- cGCGGCCuACUUg--GUACGCCuuCAa -3'
miRNA:   3'- -CGCCGGuUGGAauaCGUGUGGuuGUc -5'
17474 5' -51.3 NC_004456.1 + 30592 0.69 0.691187
Target:  5'- aGCGGCCAAgCUgg-GCGCaggugguacauuGCC-ACAGg -3'
miRNA:   3'- -CGCCGGUUgGAauaCGUG------------UGGuUGUC- -5'
17474 5' -51.3 NC_004456.1 + 29975 0.69 0.656641
Target:  5'- gGCuGGCCAugCgg--GcCACGCCAGCAc -3'
miRNA:   3'- -CG-CCGGUugGaauaC-GUGUGGUUGUc -5'
17474 5' -51.3 NC_004456.1 + 22352 0.7 0.61028
Target:  5'- uGCGGcCCAGCC---UGCugGCUAAgGGg -3'
miRNA:   3'- -CGCC-GGUUGGaauACGugUGGUUgUC- -5'
17474 5' -51.3 NC_004456.1 + 35558 0.73 0.433924
Target:  5'- aGCGGCCAAgCgcgUGaGCGCACCcaaAGCGGc -3'
miRNA:   3'- -CGCCGGUUgGa--AUaCGUGUGG---UUGUC- -5'
17474 5' -51.3 NC_004456.1 + 37053 0.73 0.423838
Target:  5'- gGCGGCCAguugcuccgcaACCUugggcugcaaauUAUGCuCACCGGCAa -3'
miRNA:   3'- -CGCCGGU-----------UGGA------------AUACGuGUGGUUGUc -5'
17474 5' -51.3 NC_004456.1 + 14731 0.73 0.423838
Target:  5'- aGCGGCCAACCUUAU-CG-ACCAAacCAGu -3'
miRNA:   3'- -CGCCGGUUGGAAUAcGUgUGGUU--GUC- -5'
17474 5' -51.3 NC_004456.1 + 15208 0.74 0.404095
Target:  5'- aGCGGCCAGCugCUUAUGUGCAuCCGuuuauuuguGCGGa -3'
miRNA:   3'- -CGCCGGUUG--GAAUACGUGU-GGU---------UGUC- -5'
17474 5' -51.3 NC_004456.1 + 15245 1.12 0.001039
Target:  5'- aGCGGCCAACCUUAUGCACACCAACAGa -3'
miRNA:   3'- -CGCCGGUUGGAAUACGUGUGGUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.