miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17475	5'	-52	NC_004456.1	+	32680	0.66	0.817742
	Target:  5'- -aGACGAaGCGUggGCCGauauuGCGGCGg -3' miRNA:   3'- uaUUGCUaCGCG--UGGCaguu-UGCCGC- -5'
17475	5'	-52	NC_004456.1	+	19729	0.67	0.745293
	Target:  5'- gAUGAUGAUGCGgGCCagugauuuGUCGgccauugcGAUGGCGu -3' miRNA:   3'- -UAUUGCUACGCgUGG--------CAGU--------UUGCCGC- -5'
17475	5'	-52	NC_004456.1	+	34663	0.67	0.766813
	Target:  5'- uUAGcCGGUGCGcCGCUGUUAu-UGGCGa -3' miRNA:   3'- uAUU-GCUACGC-GUGGCAGUuuGCCGC- -5'
17475	5'	-52	NC_004456.1	+	16537	0.7	0.563605
	Target:  5'- uUGACGGUGCGCAUCGUUAucuuugaugaGAUGaGUGc -3' miRNA:   3'- uAUUGCUACGCGUGGCAGU----------UUGC-CGC- -5'
17475	5'	-52	NC_004456.1	+	37267	0.7	0.586347
	Target:  5'- -aAGCGAgGCGCACUGgUgAAACGGuCGg -3' miRNA:   3'- uaUUGCUaCGCGUGGC-AgUUUGCC-GC- -5'
17475	5'	-52	NC_004456.1	+	15439	0.7	0.609256
	Target:  5'- aGUAACGAUGCggGCugCGUCGAcagcaaccucuACGGg- -3' miRNA:   3'- -UAUUGCUACG--CGugGCAGUU-----------UGCCgc -5'
17475	5'	-52	NC_004456.1	+	16599	1.08	0.001804
	Target:  5'- gAUAACGAUGCGCACCGUCAAACGGCGa -3' miRNA:   3'- -UAUUGCUACGCGUGGCAGUUUGCCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home