miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17477 3' -57.9 NC_004456.1 + 36197 0.66 0.478857
Target:  5'- uGCCAugGCCgCuCAGGCUGGCc---- -3'
miRNA:   3'- -UGGUugCGGgGuGUCCGGCUGucuug -5'
17477 3' -57.9 NC_004456.1 + 35389 0.66 0.468671
Target:  5'- -gCAACGCCCCAgcccuucaucauCAaGCCGAUAGGc- -3'
miRNA:   3'- ugGUUGCGGGGU------------GUcCGGCUGUCUug -5'
17477 3' -57.9 NC_004456.1 + 3394 0.66 0.468671
Target:  5'- -aCAGCGCCUCAC-GGuuGcGCAGGAg -3'
miRNA:   3'- ugGUUGCGGGGUGuCCggC-UGUCUUg -5'
17477 3' -57.9 NC_004456.1 + 19817 0.67 0.448642
Target:  5'- -gCAACGCCaUCGCAauGGCCGACAa--- -3'
miRNA:   3'- ugGUUGCGG-GGUGU--CCGGCUGUcuug -5'
17477 3' -57.9 NC_004456.1 + 18342 0.67 0.410058
Target:  5'- uGCCAACggugGCCgCCACuGGCCccuucauaGGCAGAGg -3'
miRNA:   3'- -UGGUUG----CGG-GGUGuCCGG--------CUGUCUUg -5'
17477 3' -57.9 NC_004456.1 + 20435 0.67 0.400739
Target:  5'- cUgGAUGCUUCACAGGCCGAnuGGccgugGACa -3'
miRNA:   3'- uGgUUGCGGGGUGUCCGGCUg-UC-----UUG- -5'
17477 3' -57.9 NC_004456.1 + 31323 0.68 0.391556
Target:  5'- gACCAcguucuugaAUGCCCacuUAGaGUCGGCAGAACa -3'
miRNA:   3'- -UGGU---------UGCGGGgu-GUC-CGGCUGUCUUG- -5'
17477 3' -57.9 NC_004456.1 + 28246 0.68 0.364844
Target:  5'- cGCCAACuGUCgUCGCGGuGCCGACucgauGAGCa -3'
miRNA:   3'- -UGGUUG-CGG-GGUGUC-CGGCUGu----CUUG- -5'
17477 3' -57.9 NC_004456.1 + 20254 0.7 0.285194
Target:  5'- cACCGAUGCuCCCGCA--CCGGCuGAACu -3'
miRNA:   3'- -UGGUUGCG-GGGUGUccGGCUGuCUUG- -5'
17477 3' -57.9 NC_004456.1 + 25423 0.7 0.257403
Target:  5'- uCCAACaCCuugCCACuGGCCGACAGuGCa -3'
miRNA:   3'- uGGUUGcGG---GGUGuCCGGCUGUCuUG- -5'
17477 3' -57.9 NC_004456.1 + 19388 1.08 0.000392
Target:  5'- aACCAACGCCCCACAGGCCGACAGAACu -3'
miRNA:   3'- -UGGUUGCGGGGUGUCCGGCUGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.