miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17480 5' -52.8 NC_004456.1 + 32876 0.66 0.776187
Target:  5'- gGGCuAUCUAGuagcCCUgauuuuuaaccugguUCAugGCCUUGAaCCg -3'
miRNA:   3'- -UCG-UAGGUC----GGA---------------AGUugCGGAACU-GG- -5'
17480 5' -52.8 NC_004456.1 + 12960 0.66 0.761397
Target:  5'- aAGCGUUCAGCaaUUAGCaCCUcaguucUGGCCg -3'
miRNA:   3'- -UCGUAGGUCGgaAGUUGcGGA------ACUGG- -5'
17480 5' -52.8 NC_004456.1 + 14235 0.66 0.739788
Target:  5'- uGGUAUCC-GUgUUCAcGgGCCUUGGCUu -3'
miRNA:   3'- -UCGUAGGuCGgAAGU-UgCGGAACUGG- -5'
17480 5' -52.8 NC_004456.1 + 21140 0.66 0.736503
Target:  5'- cAGCGUUCAccaccGaCCccaacucgguuacaUUCAGCGCCaUGACCg -3'
miRNA:   3'- -UCGUAGGU-----C-GG--------------AAGUUGCGGaACUGG- -5'
17480 5' -52.8 NC_004456.1 + 19919 0.67 0.733208
Target:  5'- uGGC--CCAGCCUUCcuuggugacuugguACGCCUUGcGCUu -3'
miRNA:   3'- -UCGuaGGUCGGAAGu-------------UGCGGAAC-UGG- -5'
17480 5' -52.8 NC_004456.1 + 22166 0.67 0.683925
Target:  5'- uGGCAccaCCAacaCCUUCuuuacCGCCUUGGCCc -3'
miRNA:   3'- -UCGUa--GGUc--GGAAGuu---GCGGAACUGG- -5'
17480 5' -52.8 NC_004456.1 + 14060 0.68 0.661114
Target:  5'- aAGCAUCUGGCCguuUUGACGCUccaGACg -3'
miRNA:   3'- -UCGUAGGUCGGa--AGUUGCGGaa-CUGg -5'
17480 5' -52.8 NC_004456.1 + 20704 0.68 0.626706
Target:  5'- cGGCAUCC-GCUgcCAACGCUUgugUGGCUu -3'
miRNA:   3'- -UCGUAGGuCGGaaGUUGCGGA---ACUGG- -5'
17480 5' -52.8 NC_004456.1 + 36690 0.7 0.547077
Target:  5'- gGGCuUCCAGUCU--GAUGCaUUGACCa -3'
miRNA:   3'- -UCGuAGGUCGGAagUUGCGgAACUGG- -5'
17480 5' -52.8 NC_004456.1 + 20486 1.12 0.000707
Target:  5'- aAGCAUCCAGCCUUCAACGCCUUGACCu -3'
miRNA:   3'- -UCGUAGGUCGGAAGUUGCGGAACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.