miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17481 3' -52.4 NC_004456.1 + 18751 0.66 0.771138
Target:  5'- uGGCAGCGuuucaUCAGgaauaUCACUGGCCAgcaUAUCc -3'
miRNA:   3'- -CUGUCGU-----AGUCg----AGUGGUCGGU---AUAG- -5'
17481 3' -52.4 NC_004456.1 + 32807 0.66 0.749379
Target:  5'- aGC-GCAUCAGCUCAUCaaAGuCCAUGc- -3'
miRNA:   3'- cUGuCGUAGUCGAGUGG--UC-GGUAUag -5'
17481 3' -52.4 NC_004456.1 + 42906 0.66 0.738291
Target:  5'- cAUGGUAUgCAGUUCACCggacauuacagGGCCAUAUUc -3'
miRNA:   3'- cUGUCGUA-GUCGAGUGG-----------UCGGUAUAG- -5'
17481 3' -52.4 NC_004456.1 + 35718 0.66 0.720305
Target:  5'- -cCGGCAUCgauaccagccuuggcGGCUaGCCAGCCA-GUCa -3'
miRNA:   3'- cuGUCGUAG---------------UCGAgUGGUCGGUaUAG- -5'
17481 3' -52.4 NC_004456.1 + 30925 0.67 0.692869
Target:  5'- cGCAGCuguAUCGgcuacGCUCACCAGCUG-GUCa -3'
miRNA:   3'- cUGUCG---UAGU-----CGAGUGGUCGGUaUAG- -5'
17481 3' -52.4 NC_004456.1 + 20199 0.67 0.681315
Target:  5'- gGGCAGCAUCGGUguaaUUugUGGCCGUc-- -3'
miRNA:   3'- -CUGUCGUAGUCG----AGugGUCGGUAuag -5'
17481 3' -52.4 NC_004456.1 + 33221 0.67 0.669707
Target:  5'- gGGCAGC-UCGGC-CACCuGCCuu-UCu -3'
miRNA:   3'- -CUGUCGuAGUCGaGUGGuCGGuauAG- -5'
17481 3' -52.4 NC_004456.1 + 19289 0.68 0.598494
Target:  5'- aGCAGguUCAGCaccacaugaucauUCACCAGUUcUGUCg -3'
miRNA:   3'- cUGUCguAGUCG-------------AGUGGUCGGuAUAG- -5'
17481 3' -52.4 NC_004456.1 + 38900 0.7 0.475515
Target:  5'- -cCAGCGccCAGCU-AUCAGCCGUAUCu -3'
miRNA:   3'- cuGUCGUa-GUCGAgUGGUCGGUAUAG- -5'
17481 3' -52.4 NC_004456.1 + 23988 0.71 0.443811
Target:  5'- aACGGCuuccacucUCGGUcuUCACCAGCCcgGUCa -3'
miRNA:   3'- cUGUCGu-------AGUCG--AGUGGUCGGuaUAG- -5'
17481 3' -52.4 NC_004456.1 + 2052 0.74 0.289476
Target:  5'- aACAGCAUCAGC-CACU-GCCAcAUCg -3'
miRNA:   3'- cUGUCGUAGUCGaGUGGuCGGUaUAG- -5'
17481 3' -52.4 NC_004456.1 + 20838 1.1 0.000896
Target:  5'- cGACAGCAUCAGCUCACCAGCCAUAUCu -3'
miRNA:   3'- -CUGUCGUAGUCGAGUGGUCGGUAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.