miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17484 3' -51.5 NC_004456.1 + 25537 1.11 0.001333
Target:  5'- aAACCGAAGUAACGGCGAACCGCAACCa -3'
miRNA:   3'- -UUGGCUUCAUUGCCGCUUGGCGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 14752 0.66 0.864692
Target:  5'- cACCGuuGUcacCGGCaAACCaGCGGCCa -3'
miRNA:   3'- uUGGCuuCAuu-GCCGcUUGG-CGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 39224 0.66 0.838169
Target:  5'- uAACCauuGGUAACGGagaAGCCGCGAauCCa -3'
miRNA:   3'- -UUGGcu-UCAUUGCCgc-UUGGCGUU--GG- -5'
17484 3' -51.5 NC_004456.1 + 10842 0.67 0.799552
Target:  5'- aAACCGGAGUAauagcgucACGGCcAAUauCAACCa -3'
miRNA:   3'- -UUGGCUUCAU--------UGCCGcUUGgcGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 20125 0.67 0.789391
Target:  5'- uGCUGAuaauAGUGACGGUGccaAAUCGUAACa -3'
miRNA:   3'- uUGGCU----UCAUUGCCGC---UUGGCGUUGg -5'
17484 3' -51.5 NC_004456.1 + 40132 0.67 0.779051
Target:  5'- ---aGAGGUAuggaACGGUGAACCGCuugguaacGACUg -3'
miRNA:   3'- uuggCUUCAU----UGCCGCUUGGCG--------UUGG- -5'
17484 3' -51.5 NC_004456.1 + 37799 0.68 0.72512
Target:  5'- aGACCGAAaaacccaGGCGGGCCuaaucaacccuGCAACCa -3'
miRNA:   3'- -UUGGCUUcauug--CCGCUUGG-----------CGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 41317 0.68 0.713978
Target:  5'- gGugCGGAGc--UGGUGGGCCGC-ACCg -3'
miRNA:   3'- -UugGCUUCauuGCCGCUUGGCGuUGG- -5'
17484 3' -51.5 NC_004456.1 + 37067 0.7 0.622737
Target:  5'- uGCuCGAugaaAGUGGCGGCcaguugcuCCGCAACCu -3'
miRNA:   3'- uUG-GCU----UCAUUGCCGcuu-----GGCGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 27605 0.75 0.333929
Target:  5'- cACCGA--UAACGGCaGAGCCGCccGCCg -3'
miRNA:   3'- uUGGCUucAUUGCCG-CUUGGCGu-UGG- -5'
17484 3' -51.5 NC_004456.1 + 20880 0.8 0.169762
Target:  5'- -cCCGGAGgcaAACGGCcaGAGCCGCAACUa -3'
miRNA:   3'- uuGGCUUCa--UUGCCG--CUUGGCGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 17152 0.66 0.847259
Target:  5'- aGACCGAGGUugauUGGa-AACCGCuguauGACCg -3'
miRNA:   3'- -UUGGCUUCAuu--GCCgcUUGGCG-----UUGG- -5'
17484 3' -51.5 NC_004456.1 + 27523 0.66 0.838169
Target:  5'- -uCUGgcGUcaucGGCGGCGGGCgGCucuGCCg -3'
miRNA:   3'- uuGGCuuCA----UUGCCGCUUGgCGu--UGG- -5'
17484 3' -51.5 NC_004456.1 + 22367 0.66 0.838169
Target:  5'- uGGCUaaGggGUGAUGGaugaacgagcaGAACCGgGACCu -3'
miRNA:   3'- -UUGG--CuuCAUUGCCg----------CUUGGCgUUGG- -5'
17484 3' -51.5 NC_004456.1 + 20627 0.67 0.768546
Target:  5'- aGGCCGAAGccacacaagcguUGGCaGCGGAUgccgcaaaCGCAACCa -3'
miRNA:   3'- -UUGGCUUC------------AUUGcCGCUUG--------GCGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 37340 0.68 0.757886
Target:  5'- cGCCGAAGaAGCccguGCG-GCUGCGGCCu -3'
miRNA:   3'- uUGGCUUCaUUGc---CGCuUGGCGUUGG- -5'
17484 3' -51.5 NC_004456.1 + 9671 0.7 0.645725
Target:  5'- gGACCaGggG-GACGGUGAAuCUGCcGCCg -3'
miRNA:   3'- -UUGG-CuuCaUUGCCGCUU-GGCGuUGG- -5'
17484 3' -51.5 NC_004456.1 + 18426 0.7 0.622737
Target:  5'- cAGCCGuuGGUAAUGGCcuGAcACCGCGAUg -3'
miRNA:   3'- -UUGGCu-UCAUUGCCG--CU-UGGCGUUGg -5'
17484 3' -51.5 NC_004456.1 + 32380 0.72 0.52089
Target:  5'- uAACCGAAGUGAagcCGGUGGAguuccCUGguGCCg -3'
miRNA:   3'- -UUGGCUUCAUU---GCCGCUU-----GGCguUGG- -5'
17484 3' -51.5 NC_004456.1 + 8175 0.73 0.436202
Target:  5'- uACCGAAGaAGCGGCGAgaGCUuuugcaggguGUAACCg -3'
miRNA:   3'- uUGGCUUCaUUGCCGCU--UGG----------CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.