miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17485 3' -53.9 NC_004456.1 + 23162 0.66 0.679898
Target:  5'- gAGCGGUacuaucagCGggCGCAAGGGCGGUUUACu -3'
miRNA:   3'- -UCGUCG--------GUaaGCGUUUCUGUCGGGUG- -5'
17485 3' -53.9 NC_004456.1 + 1237 0.66 0.656924
Target:  5'- uGGaauGCUAUUCGaCAuAGAUGGCCCGg -3'
miRNA:   3'- -UCgu-CGGUAAGC-GUuUCUGUCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 26513 0.67 0.622304
Target:  5'- cAGCAGCCAUguuuUUGUuuguGGugGGCUgGCu -3'
miRNA:   3'- -UCGUCGGUA----AGCGuu--UCugUCGGgUG- -5'
17485 3' -53.9 NC_004456.1 + 14732 0.67 0.603855
Target:  5'- cAGCGGCCAaccUuaucgaccaaaccagUCGCcuGGGCaAGCCCAa -3'
miRNA:   3'- -UCGUCGGU---A---------------AGCGuuUCUG-UCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 8396 0.67 0.599252
Target:  5'- aGGCAGCC---UGgGAAGACAGgCCGg -3'
miRNA:   3'- -UCGUCGGuaaGCgUUUCUGUCgGGUg -5'
17485 3' -53.9 NC_004456.1 + 16367 0.67 0.572899
Target:  5'- uAGUAGCCGauaGCAAGGuCaacaauuuugguguAGCCCACa -3'
miRNA:   3'- -UCGUCGGUaagCGUUUCuG--------------UCGGGUG- -5'
17485 3' -53.9 NC_004456.1 + 31301 0.68 0.564929
Target:  5'- cGGaCAGCCugGUUCGCAAccaccuguGGGCGGUugaCCGCa -3'
miRNA:   3'- -UC-GUCGG--UAAGCGUU--------UCUGUCG---GGUG- -5'
17485 3' -53.9 NC_004456.1 + 33485 0.68 0.554726
Target:  5'- cGGCAgGCCAaaaagcuggagagaaUCGCAGAGAUagaAGCCCGu -3'
miRNA:   3'- -UCGU-CGGUa--------------AGCGUUUCUG---UCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 18283 0.68 0.553595
Target:  5'- uGGCGGCCAccgUUgGCAggacaucgGAGACuauGGCCCGg -3'
miRNA:   3'- -UCGUCGGU---AAgCGU--------UUCUG---UCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 20609 0.68 0.54233
Target:  5'- aAGCGGUgAaaagCGCAAAGGCcgaAGCCaCACa -3'
miRNA:   3'- -UCGUCGgUaa--GCGUUUCUG---UCGG-GUG- -5'
17485 3' -53.9 NC_004456.1 + 8648 0.68 0.520039
Target:  5'- uAGgGGCCGguUUUGCAaaccAAGACGGCaCCAUu -3'
miRNA:   3'- -UCgUCGGU--AAGCGU----UUCUGUCG-GGUG- -5'
17485 3' -53.9 NC_004456.1 + 40237 0.68 0.520039
Target:  5'- aGGCuGCUuc-CGCAAucaGGGCAGCCgCACu -3'
miRNA:   3'- -UCGuCGGuaaGCGUU---UCUGUCGG-GUG- -5'
17485 3' -53.9 NC_004456.1 + 8791 0.69 0.48731
Target:  5'- cAGCAGCCAca-GCAAGGugguuaucaGCAGCCuCAg -3'
miRNA:   3'- -UCGUCGGUaagCGUUUC---------UGUCGG-GUg -5'
17485 3' -53.9 NC_004456.1 + 3413 0.69 0.480879
Target:  5'- cAGgAGCCAUUUGCGGAGuGCAuuugcuucuuugcuuGUCCACu -3'
miRNA:   3'- -UCgUCGGUAAGCGUUUC-UGU---------------CGGGUG- -5'
17485 3' -53.9 NC_004456.1 + 39549 0.69 0.476616
Target:  5'- cGUAGCCAUaccuguuaUgGCGGgauGACAGCCCGg -3'
miRNA:   3'- uCGUCGGUA--------AgCGUUu--CUGUCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 15927 0.69 0.455586
Target:  5'- uAGCAGCCuggUCGCA---GCuGCCCGu -3'
miRNA:   3'- -UCGUCGGua-AGCGUuucUGuCGGGUg -5'
17485 3' -53.9 NC_004456.1 + 27729 0.7 0.415093
Target:  5'- -uUAGCCAgagaccagagUGCAAuGGCGGCCCACu -3'
miRNA:   3'- ucGUCGGUaa--------GCGUUuCUGUCGGGUG- -5'
17485 3' -53.9 NC_004456.1 + 19827 0.7 0.415093
Target:  5'- aAGCGGUCGUgcaacgccaUCGCAAuGGCcgacaaaucacuGGCCCGCa -3'
miRNA:   3'- -UCGUCGGUA---------AGCGUUuCUG------------UCGGGUG- -5'
17485 3' -53.9 NC_004456.1 + 20821 0.71 0.386213
Target:  5'- gAGCAGCUGUUCGCuAAGAUGGCg--- -3'
miRNA:   3'- -UCGUCGGUAAGCGuUUCUGUCGggug -5'
17485 3' -53.9 NC_004456.1 + 32767 0.71 0.373197
Target:  5'- cGGCGGCCAauggaagaccgcCGCAAuauCGGCCCACg -3'
miRNA:   3'- -UCGUCGGUaa----------GCGUUucuGUCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.