Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17485 | 3' | -53.9 | NC_004456.1 | + | 14732 | 0.67 | 0.603855 |
Target: 5'- cAGCGGCCAaccUuaucgaccaaaccagUCGCcuGGGCaAGCCCAa -3' miRNA: 3'- -UCGUCGGU---A---------------AGCGuuUCUG-UCGGGUg -5' |
|||||||
17485 | 3' | -53.9 | NC_004456.1 | + | 26513 | 0.67 | 0.622304 |
Target: 5'- cAGCAGCCAUguuuUUGUuuguGGugGGCUgGCu -3' miRNA: 3'- -UCGUCGGUA----AGCGuu--UCugUCGGgUG- -5' |
|||||||
17485 | 3' | -53.9 | NC_004456.1 | + | 1237 | 0.66 | 0.656924 |
Target: 5'- uGGaauGCUAUUCGaCAuAGAUGGCCCGg -3' miRNA: 3'- -UCgu-CGGUAAGC-GUuUCUGUCGGGUg -5' |
|||||||
17485 | 3' | -53.9 | NC_004456.1 | + | 23162 | 0.66 | 0.679898 |
Target: 5'- gAGCGGUacuaucagCGggCGCAAGGGCGGUUUACu -3' miRNA: 3'- -UCGUCG--------GUaaGCGUUUCUGUCGGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home