miRNA: 3'- -CGUggCCGAUU----UCGGUU-------------UCGUGGGUG- -5'
miRNA: 3'- -CGUGGCCG----AUUUCGGUUUCG---UGgGUG- -5'
miRNA: 3'- -CGUGgCCGAuuUCGGUUu-CGUGGGUG- -5'
miRNA: 3'- -CGUGGCCGAUUUCGGUUUCGUGGGUG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17489 | 5' | -53.5 | NC_004456.1 | + | 36277 | 0.73 | 0.324719 |
|
Target: 5'- uGCAgaGGCUGAccaaGGCCAGccugagcggccauGGCAUCCACu -3' miRNA: 3'- -CGUggCCGAUU----UCGGUU-------------UCGUGGGUG- -5' |
|||||||
| 17489 | 5' | -53.5 | NC_004456.1 | + | 37246 | 0.74 | 0.278568 |
|
Target: 5'- cGUACUGGCaagaUAAGGCCAAAGCgagGCgCACu -3' miRNA: 3'- -CGUGGCCG----AUUUCGGUUUCG---UGgGUG- -5' |
|||||||
| 17489 | 5' | -53.5 | NC_004456.1 | + | 25452 | 0.75 | 0.243676 |
|
Target: 5'- uGCACgGGCUcgGGCUGGuuGCAUCCGCa -3' miRNA: 3'- -CGUGgCCGAuuUCGGUUu-CGUGGGUG- -5' |
|||||||
| 17489 | 5' | -53.5 | NC_004456.1 | + | 34716 | 1.12 | 0.000556 |
|
Target: 5'- cGCACCGGCUAAAGCCAAAGCACCCACu -3' miRNA: 3'- -CGUGGCCGAUUUCGGUUUCGUGGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home