Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17490 | 3' | -59.2 | NC_004456.1 | + | 20479 | 0.66 | 0.439161 |
Target: 5'- cAGCCuucaACGCCuuGACCuGCUCGGC-GGUCAu -3' miRNA: 3'- -UCGG----UGUGG--CUGG-CGGGUCGaCUAGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 23722 | 0.66 | 0.42952 |
Target: 5'- -uCCACAUCGACuCGCCCAGguacaagguUUGAUUc -3' miRNA: 3'- ucGGUGUGGCUG-GCGGGUC---------GACUAGu -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 15976 | 0.67 | 0.374404 |
Target: 5'- aGGCCACgACCGAgCUaCCCGGCUuGAgcgUCAa -3' miRNA: 3'- -UCGGUG-UGGCU-GGcGGGUCGA-CU---AGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 20393 | 0.68 | 0.324281 |
Target: 5'- aAGCCcgggGCA-UGACCGCCgAGCaGGUCAa -3' miRNA: 3'- -UCGG----UGUgGCUGGCGGgUCGaCUAGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 23505 | 0.68 | 0.301158 |
Target: 5'- cGCCGCugUG---GCCCAGCUGAUUc -3' miRNA: 3'- uCGGUGugGCuggCGGGUCGACUAGu -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 20267 | 0.7 | 0.226691 |
Target: 5'- cGGCCacaaauuACACCGAugcucCCGCaCCGGCUGAacuggUCAg -3' miRNA: 3'- -UCGG-------UGUGGCU-----GGCG-GGUCGACU-----AGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 20751 | 0.7 | 0.215627 |
Target: 5'- uGCCAcCGuuGGCCGCCCagauauGGCUGGUgAg -3' miRNA: 3'- uCGGU-GUggCUGGCGGG------UCGACUAgU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 30931 | 0.71 | 0.197513 |
Target: 5'- uAGCCACGCa-GCUGUaucggcuacgcucaCCAGCUGGUCAg -3' miRNA: 3'- -UCGGUGUGgcUGGCG--------------GGUCGACUAGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 32496 | 0.76 | 0.094248 |
Target: 5'- uGCCGcCACCGACCGCcguauCCAGCacGAUCAc -3' miRNA: 3'- uCGGU-GUGGCUGGCG-----GGUCGa-CUAGU- -5' |
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17490 | 3' | -59.2 | NC_004456.1 | + | 35280 | 1.08 | 0.000308 |
Target: 5'- cAGCCACACCGACCGCCCAGCUGAUCAa -3' miRNA: 3'- -UCGGUGUGGCUGGCGGGUCGACUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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