miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17490 5' -45.9 NC_004456.1 + 9718 0.66 0.992965
Target:  5'- uGGUccauUGCUcgcucaaccaGGCGGUCAUCAaAUUUGAu -3'
miRNA:   3'- -CCAuu--ACGG----------UCGCUAGUGGU-UAAACU- -5'
17490 5' -45.9 NC_004456.1 + 6937 0.66 0.991751
Target:  5'- cGGUGAUaa-GGUGAUCACCAAa---- -3'
miRNA:   3'- -CCAUUAcggUCGCUAGUGGUUaaacu -5'
17490 5' -45.9 NC_004456.1 + 20332 0.67 0.983005
Target:  5'- -----cGCCAGCGA-CugCAGgcgUUGAu -3'
miRNA:   3'- ccauuaCGGUCGCUaGugGUUa--AACU- -5'
17490 5' -45.9 NC_004456.1 + 30916 0.67 0.983005
Target:  5'- --cGAUGCCGccGCGAUUACCuaccUGAg -3'
miRNA:   3'- ccaUUACGGU--CGCUAGUGGuuaaACU- -5'
17490 5' -45.9 NC_004456.1 + 35062 0.67 0.980628
Target:  5'- -----aGCCaAGCGcAUCACCAAUcggUGAc -3'
miRNA:   3'- ccauuaCGG-UCGC-UAGUGGUUAa--ACU- -5'
17490 5' -45.9 NC_004456.1 + 4014 0.67 0.975141
Target:  5'- aGUAccGCCAGCGAUuCAUCAGc---- -3'
miRNA:   3'- cCAUuaCGGUCGCUA-GUGGUUaaacu -5'
17490 5' -45.9 NC_004456.1 + 27681 0.68 0.972008
Target:  5'- --aGGUGCCAGUuGUCACCcuUUUGc -3'
miRNA:   3'- ccaUUACGGUCGcUAGUGGuuAAACu -5'
17490 5' -45.9 NC_004456.1 + 22219 0.68 0.960504
Target:  5'- uGGUGGUGCCAGuCGGgaacgcaugaccuUUACCcgcUUUGAu -3'
miRNA:   3'- -CCAUUACGGUC-GCU-------------AGUGGuu-AAACU- -5'
17490 5' -45.9 NC_004456.1 + 10489 0.69 0.956628
Target:  5'- uGGcAAUGCUu-CGAUCACCuuUUUGAc -3'
miRNA:   3'- -CCaUUACGGucGCUAGUGGuuAAACU- -5'
17490 5' -45.9 NC_004456.1 + 10076 0.69 0.956628
Target:  5'- uGGcAAUGCUu-CGAUCACCuuUUUGAc -3'
miRNA:   3'- -CCaUUACGGucGCUAGUGGuuAAACU- -5'
17490 5' -45.9 NC_004456.1 + 35241 1.13 0.004136
Target:  5'- uGGUAAUGCCAGCGAUCACCAAUUUGAc -3'
miRNA:   3'- -CCAUUACGGUCGCUAGUGGUUAAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.