miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17491 3' -57.1 NC_004456.1 + 33218 0.66 0.537435
Target:  5'- --cAGCUcGgccACCuGCcuuUCUGCUGCCGCa -3'
miRNA:   3'- cuuUCGA-Ca--UGGcCG---AGGCGACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 13581 0.66 0.537435
Target:  5'- cAAGGCuUGUAUCGaGCUUgGUUGCCa- -3'
miRNA:   3'- cUUUCG-ACAUGGC-CGAGgCGACGGcg -5'
17491 3' -57.1 NC_004456.1 + 35366 0.66 0.515968
Target:  5'- -cAAGCUGgACUGGCUUgGUagUGCUGUu -3'
miRNA:   3'- cuUUCGACaUGGCCGAGgCG--ACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 34813 0.66 0.491722
Target:  5'- gGAcGGCUGUcaGCUGGCUaaUCGCaccaaaggcggucaUGCCGUa -3'
miRNA:   3'- -CUuUCGACA--UGGCCGA--GGCG--------------ACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 30745 0.67 0.453878
Target:  5'- -cGAGCaGUACacuggcauuuUGGCUCUGCUGuCUGCc -3'
miRNA:   3'- cuUUCGaCAUG----------GCCGAGGCGAC-GGCG- -5'
17491 3' -57.1 NC_004456.1 + 28864 0.67 0.443923
Target:  5'- cGAAGCggGaAUCGGUUCCGCguauucauaaUGCCGUc -3'
miRNA:   3'- cUUUCGa-CaUGGCCGAGGCG----------ACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 35640 0.67 0.443923
Target:  5'- --cAGCUGcUGCCGcuuugggugcGCUCaCGCgcuugGCCGCu -3'
miRNA:   3'- cuuUCGAC-AUGGC----------CGAG-GCGa----CGGCG- -5'
17491 3' -57.1 NC_004456.1 + 20957 0.67 0.434091
Target:  5'- aGGAGGUaGUugCGGCUCUG--GCCGUu -3'
miRNA:   3'- -CUUUCGaCAugGCCGAGGCgaCGGCG- -5'
17491 3' -57.1 NC_004456.1 + 30923 0.68 0.424386
Target:  5'- --cAGCUGUAUCGGCUaCGCUcaccaGCUGg -3'
miRNA:   3'- cuuUCGACAUGGCCGAgGCGA-----CGGCg -5'
17491 3' -57.1 NC_004456.1 + 18883 0.69 0.360263
Target:  5'- ---cGCUGgugcGCCauGGUUCCaGCUGCUGCu -3'
miRNA:   3'- cuuuCGACa---UGG--CCGAGG-CGACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 20716 0.69 0.351672
Target:  5'- --uGGUUGcguUugCGGCaUCCGCUGCCa- -3'
miRNA:   3'- cuuUCGAC---AugGCCG-AGGCGACGGcg -5'
17491 3' -57.1 NC_004456.1 + 30592 0.69 0.351672
Target:  5'- aAAGGCgGUggcAUCGGCaUCCGgUGCCGUc -3'
miRNA:   3'- cUUUCGaCA---UGGCCG-AGGCgACGGCG- -5'
17491 3' -57.1 NC_004456.1 + 35702 1.11 0.000318
Target:  5'- uGAAAGCUGUACCGGCUCCGCUGCCGCu -3'
miRNA:   3'- -CUUUCGACAUGGCCGAGGCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.