miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17494 5' -51.7 NC_004456.1 + 24751 0.66 0.816972
Target:  5'- aGGUUUAUgccgCCACGGCAGagGCUUugGCCCGUu -3'
miRNA:   3'- -CCGAGUA----GGUGUUGUU--UGAG--CGGGUA- -5'
17494 5' -51.7 NC_004456.1 + 13563 0.66 0.814018
Target:  5'- gGGCUCAggugCCACAGCcaAGGCUUGUaucgagcuugguugCCAUu -3'
miRNA:   3'- -CCGAGUa---GGUGUUG--UUUGAGCG--------------GGUA- -5'
17494 5' -51.7 NC_004456.1 + 16171 0.66 0.807053
Target:  5'- cGGCggCGUCCAgGuCGAacguacACUCGUCCAg -3'
miRNA:   3'- -CCGa-GUAGGUgUuGUU------UGAGCGGGUa -5'
17494 5' -51.7 NC_004456.1 + 22645 0.66 0.807053
Target:  5'- cGGUU--UCCAUAACGAAaaCGCCCGc -3'
miRNA:   3'- -CCGAguAGGUGUUGUUUgaGCGGGUa -5'
17494 5' -51.7 NC_004456.1 + 34406 0.66 0.807053
Target:  5'- aGCUCuuggaaaCCgGCAGCGGGCUCcuuGCCCAUa -3'
miRNA:   3'- cCGAGua-----GG-UGUUGUUUGAG---CGGGUA- -5'
17494 5' -51.7 NC_004456.1 + 25901 0.66 0.796929
Target:  5'- aGGUgaUCGUUCAauCGACGGACUUGCCgAUu -3'
miRNA:   3'- -CCG--AGUAGGU--GUUGUUUGAGCGGgUA- -5'
17494 5' -51.7 NC_004456.1 + 15857 0.67 0.76546
Target:  5'- gGGCccgccgUAUCCAaAACGAGCUgGCCCu- -3'
miRNA:   3'- -CCGa-----GUAGGUgUUGUUUGAgCGGGua -5'
17494 5' -51.7 NC_004456.1 + 16485 0.67 0.743696
Target:  5'- aGGCggCAgCCugAcccugguugguGCAAACUCGCCUAc -3'
miRNA:   3'- -CCGa-GUaGGugU-----------UGUUUGAGCGGGUa -5'
17494 5' -51.7 NC_004456.1 + 42149 0.71 0.537541
Target:  5'- uGGUUCAUCUggaugaagACAAcCAAGCUCGCCa-- -3'
miRNA:   3'- -CCGAGUAGG--------UGUU-GUUUGAGCGGgua -5'
17494 5' -51.7 NC_004456.1 + 23742 0.78 0.21923
Target:  5'- cGGCguaauucCAUCCGCAuuccACAucGACUCGCCCAg -3'
miRNA:   3'- -CCGa------GUAGGUGU----UGU--UUGAGCGGGUa -5'
17494 5' -51.7 NC_004456.1 + 36879 1.09 0.001533
Target:  5'- uGGCUCAUCCACAACAAACUCGCCCAUg -3'
miRNA:   3'- -CCGAGUAGGUGUUGUUUGAGCGGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.