miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17496 3' -33.9 NC_004456.1 + 27729 0.75 1
Target:  5'- aUGAAGCG----AAGUGGGAAAC-CGCu -3'
miRNA:   3'- -ACUUUGUaauuUUCAUUUUUUGaGCG- -5'
17496 3' -33.9 NC_004456.1 + 23769 0.68 1
Target:  5'- cGggGCAUacgccAGGUAAAucuCUUGCg -3'
miRNA:   3'- aCuuUGUAauu--UUCAUUUuuuGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 42353 0.7 1
Target:  5'- cUGAAuugGUUGAGauAGUAAA-AGCUCGCc -3'
miRNA:   3'- -ACUUug-UAAUUU--UCAUUUuUUGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 5767 0.7 1
Target:  5'- ---cGCAgcu-GAGgcAAAAGCUCGCc -3'
miRNA:   3'- acuuUGUaauuUUCauUUUUUGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 8239 0.66 1
Target:  5'- aGAAACAUUAAGc---AAGAACUacaUGCg -3'
miRNA:   3'- aCUUUGUAAUUUucauUUUUUGA---GCG- -5'
17496 3' -33.9 NC_004456.1 + 683 0.66 1
Target:  5'- aGAAGCGUUGAA--UGAAAAGCa--- -3'
miRNA:   3'- aCUUUGUAAUUUucAUUUUUUGagcg -5'
17496 3' -33.9 NC_004456.1 + 34106 0.66 1
Target:  5'- -cGAAUGUU---GGUAuuAAGGGCUCGCa -3'
miRNA:   3'- acUUUGUAAuuuUCAU--UUUUUGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 24511 0.66 1
Target:  5'- cGGAGCGgcAGAAGUGccGGucACUgGCg -3'
miRNA:   3'- aCUUUGUaaUUUUCAU--UUuuUGAgCG- -5'
17496 3' -33.9 NC_004456.1 + 16967 0.67 1
Target:  5'- uUGuAAGCAUUGcggcGAGGUGAAAAuCUCa- -3'
miRNA:   3'- -AC-UUUGUAAU----UUUCAUUUUUuGAGcg -5'
17496 3' -33.9 NC_004456.1 + 22016 0.68 1
Target:  5'- cGAAGCugcugUGAAucgccuggguGGUGAu--ACUCGCa -3'
miRNA:   3'- aCUUUGua---AUUU----------UCAUUuuuUGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 22472 0.69 1
Target:  5'- aUGgcGCAacUGAGAccGUAGAGGGCUUGCu -3'
miRNA:   3'- -ACuuUGUa-AUUUU--CAUUUUUUGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 2400 0.69 1
Target:  5'- aGAggUAUUGGGGGUGAuAAAugUCa- -3'
miRNA:   3'- aCUuuGUAAUUUUCAUU-UUUugAGcg -5'
17496 3' -33.9 NC_004456.1 + 20837 0.71 1
Target:  5'- aGAuGGCGgaUGAAGGUGAAGAACU-GCa -3'
miRNA:   3'- aCU-UUGUa-AUUUUCAUUUUUUGAgCG- -5'
17496 3' -33.9 NC_004456.1 + 42043 0.66 1
Target:  5'- -aAGACGUUGAacgagcaAAGcUAAAGGuCUCGCa -3'
miRNA:   3'- acUUUGUAAUU-------UUC-AUUUUUuGAGCG- -5'
17496 3' -33.9 NC_004456.1 + 7703 0.76 0.999998
Target:  5'- aGAGGCAUUAAGAaccugAGAAAACUCa- -3'
miRNA:   3'- aCUUUGUAAUUUUca---UUUUUUGAGcg -5'
17496 3' -33.9 NC_004456.1 + 38518 1.18 0.075016
Target:  5'- aUGAAACAUUAAAAGUAAAAAACUCGCc -3'
miRNA:   3'- -ACUUUGUAAUUUUCAUUUUUUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.