Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17499 | 3' | -60.9 | NC_004456.1 | + | 38495 | 0.66 | 0.342678 |
Target: 5'- uCGCCguuugggucgGCGAGUCUuccuuUGGcCCAGCcuugUGCUGGg -3' miRNA: 3'- -GUGG----------UGCUCGGG-----ACC-GGUCG----ACGACC- -5' |
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17499 | 3' | -60.9 | NC_004456.1 | + | 35812 | 0.66 | 0.334594 |
Target: 5'- cCACCGCcuGCCaugacuggCUGGCUAGCcgccaagGCUGGu -3' miRNA: 3'- -GUGGUGcuCGG--------GACCGGUCGa------CGACC- -5' |
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17499 | 3' | -60.9 | NC_004456.1 | + | 30355 | 0.67 | 0.289041 |
Target: 5'- uGCCuaauCGaAGCCCUGGCCuG-UGCcGGg -3' miRNA: 3'- gUGGu---GC-UCGGGACCGGuCgACGaCC- -5' |
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17499 | 3' | -60.9 | NC_004456.1 | + | 20138 | 0.69 | 0.230058 |
Target: 5'- cCGCUGCuuauGCCUUGGCCuGCUGUUGu -3' miRNA: 3'- -GUGGUGcu--CGGGACCGGuCGACGACc -5' |
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17499 | 3' | -60.9 | NC_004456.1 | + | 25454 | 0.69 | 0.224171 |
Target: 5'- gUugCACGGGCUCgGGCUGGUUGCa-- -3' miRNA: 3'- -GugGUGCUCGGGaCCGGUCGACGacc -5' |
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17499 | 3' | -60.9 | NC_004456.1 | + | 4175 | 1.09 | 0.000176 |
Target: 5'- aCACCACGAGCCCUGGCCAGCUGCUGGu -3' miRNA: 3'- -GUGGUGCUCGGGACCGGUCGACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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