miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17499 5' -52.1 NC_004456.1 + 33426 0.66 0.77266
Target:  5'- uUGCCGGggcucagUCGaaGGCgAAGCAggagGCCAg -3'
miRNA:   3'- -ACGGUCaa-----AGCa-CCGgUUUGUa---CGGU- -5'
17499 5' -52.1 NC_004456.1 + 41284 0.67 0.737828
Target:  5'- aUGCCAuacggcggGUGGCCAGGCGgacucGCCAg -3'
miRNA:   3'- -ACGGUcaaag---CACCGGUUUGUa----CGGU- -5'
17499 5' -52.1 NC_004456.1 + 30701 0.67 0.717673
Target:  5'- cGCCAGUc---UGGUCAAAaAUGCCAu -3'
miRNA:   3'- aCGGUCAaagcACCGGUUUgUACGGU- -5'
17499 5' -52.1 NC_004456.1 + 16042 0.68 0.683437
Target:  5'- aGCCGGguagcucggUCGUGGCCu----UGCCu -3'
miRNA:   3'- aCGGUCaa-------AGCACCGGuuuguACGGu -5'
17499 5' -52.1 NC_004456.1 + 21863 0.69 0.62545
Target:  5'- aUGCgAa---CGUGGCCGAGuCAUGCCGc -3'
miRNA:   3'- -ACGgUcaaaGCACCGGUUU-GUACGGU- -5'
17499 5' -52.1 NC_004456.1 + 21158 0.69 0.590639
Target:  5'- uUGCCaaAGgcacCGUGGUCGAugcuCAUGCCAu -3'
miRNA:   3'- -ACGG--UCaaa-GCACCGGUUu---GUACGGU- -5'
17499 5' -52.1 NC_004456.1 + 15317 0.71 0.478494
Target:  5'- cUGaCCAGU---GUGGCCGGugAUGCCc -3'
miRNA:   3'- -AC-GGUCAaagCACCGGUUugUACGGu -5'
17499 5' -52.1 NC_004456.1 + 4217 1.09 0.001166
Target:  5'- gUGCCAGUUUCGUGGCCAAACAUGCCAa -3'
miRNA:   3'- -ACGGUCAAAGCACCGGUUUGUACGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.