miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17504 5' -56.2 NC_004456.1 + 42573 0.66 0.613043
Target:  5'- uGUGGCCGUcagcgugaAGCUGUgaggcuacguUGGUGgauAUGGUUg -3'
miRNA:   3'- cCACCGGCG--------UCGGCA----------ACCAU---UACCGG- -5'
17504 5' -56.2 NC_004456.1 + 7849 0.66 0.601953
Target:  5'- --cGGCgGCGGCCa----UGAUGGCCa -3'
miRNA:   3'- ccaCCGgCGUCGGcaaccAUUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 27537 0.66 0.579861
Target:  5'- cGGcgGGCgGCucuGCCGUUaucGGUGGCCc -3'
miRNA:   3'- -CCa-CCGgCGu--CGGCAAccaUUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 16874 0.67 0.554678
Target:  5'- uGGUGGCCGCuggugaguuccGGUCGauuaagccguuuacUUGcu-GUGGCCa -3'
miRNA:   3'- -CCACCGGCG-----------UCGGC--------------AACcauUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 14678 0.67 0.547075
Target:  5'- aGGuUGGCCGCugguuuGCCGgugacaacGGUGccgauGUGGCa -3'
miRNA:   3'- -CC-ACCGGCGu-----CGGCaa------CCAU-----UACCGg -5'
17504 5' -56.2 NC_004456.1 + 37410 0.67 0.547075
Target:  5'- --aGGCCGCAGCCGcacGGgcuucuucGGCg -3'
miRNA:   3'- ccaCCGGCGUCGGCaa-CCauua----CCGg -5'
17504 5' -56.2 NC_004456.1 + 18473 0.67 0.525544
Target:  5'- --cGGCUGCGGCCaccca-AGUGGCCa -3'
miRNA:   3'- ccaCCGGCGUCGGcaaccaUUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 34783 0.67 0.504341
Target:  5'- --aGGCgGUcauGCCGUaccgGGUcAUGGCCa -3'
miRNA:   3'- ccaCCGgCGu--CGGCAa---CCAuUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 28199 0.68 0.493879
Target:  5'- -uUGGCgGCGGCCucUGGUGucgcaacuAUGGCg -3'
miRNA:   3'- ccACCGgCGUCGGcaACCAU--------UACCGg -5'
17504 5' -56.2 NC_004456.1 + 20448 0.68 0.47326
Target:  5'- --aGGCCGanuGGCCGUggacaauggucUGGcUGAUGGCg -3'
miRNA:   3'- ccaCCGGCg--UCGGCA-----------ACC-AUUACCGg -5'
17504 5' -56.2 NC_004456.1 + 37357 0.69 0.429505
Target:  5'- --cGGCUGCGGCCucugaGUUGGccucuuugcagcGUGGCCg -3'
miRNA:   3'- ccaCCGGCGUCGG-----CAACCau----------UACCGG- -5'
17504 5' -56.2 NC_004456.1 + 17588 0.69 0.414193
Target:  5'- cGG-GGCCGCauAGUCGUUaccaccacgGAUGGCCa -3'
miRNA:   3'- -CCaCCGGCG--UCGGCAAcca------UUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 20384 0.69 0.404795
Target:  5'- uGGUGGCCGaAGCCcg-GGgcAUGaccGCCg -3'
miRNA:   3'- -CCACCGGCgUCGGcaaCCauUAC---CGG- -5'
17504 5' -56.2 NC_004456.1 + 34668 0.7 0.368581
Target:  5'- cGGUGcGCCGCuGUUaUUGGcGAUGGCa -3'
miRNA:   3'- -CCAC-CGGCGuCGGcAACCaUUACCGg -5'
17504 5' -56.2 NC_004456.1 + 41307 0.73 0.249479
Target:  5'- uGGUgGGCCGCA-CCGUUaucaccaugccauacGGcgGGUGGCCa -3'
miRNA:   3'- -CCA-CCGGCGUcGGCAA---------------CCa-UUACCGG- -5'
17504 5' -56.2 NC_004456.1 + 18417 1.13 0.000289
Target:  5'- gGGUGGCCGCAGCCGUUGGUAAUGGCCu -3'
miRNA:   3'- -CCACCGGCGUCGGCAACCAUUACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.