miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17506 5' -53.8 NC_004456.1 + 20619 1.13 0.000472
Target:  5'- aAGCGCAAAGGCCGAAGCCACACAAGCg -3'
miRNA:   3'- -UCGCGUUUCCGGCUUCGGUGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 37422 0.84 0.053835
Target:  5'- aGGCcaacuCAGAGGCCGcAGCCGCACGGGCu -3'
miRNA:   3'- -UCGc----GUUUCCGGCuUCGGUGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 24333 0.75 0.224667
Target:  5'- cGGCGCAccaccauuGAGGCCGAuuuuugcggcAGUCACAUccGCa -3'
miRNA:   3'- -UCGCGU--------UUCCGGCU----------UCGGUGUGuuCG- -5'
17506 5' -53.8 NC_004456.1 + 20423 0.74 0.278513
Target:  5'- aGGCGuUGAAGGCUGGAuGCUuCACAGGCc -3'
miRNA:   3'- -UCGC-GUUUCCGGCUU-CGGuGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 12136 0.71 0.396373
Target:  5'- cGGUugGCAGAGGCUGAAauGgCGgGCAAGCg -3'
miRNA:   3'- -UCG--CGUUUCCGGCUU--CgGUgUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 25108 0.7 0.445582
Target:  5'- uGGUGCucGAGGCCaaaauuaacGAuGCCACcCGAGCg -3'
miRNA:   3'- -UCGCGu-UUCCGG---------CUuCGGUGuGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 6218 0.69 0.498021
Target:  5'- uAGUuUAGGGGCCGAAcCCuuggaACGCAAGCa -3'
miRNA:   3'- -UCGcGUUUCCGGCUUcGG-----UGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 36311 0.69 0.519765
Target:  5'- -uCGUAAcGGCC-AAGCC-CGCAAGCu -3'
miRNA:   3'- ucGCGUUuCCGGcUUCGGuGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 36278 0.68 0.564284
Target:  5'- -cUGCAGAGGCUGAccaaGGCCAgCcUGAGCg -3'
miRNA:   3'- ucGCGUUUCCGGCU----UCGGU-GuGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 34719 0.68 0.564284
Target:  5'- cGGCGCAccGGCUaAAGCCA---AAGCa -3'
miRNA:   3'- -UCGCGUuuCCGGcUUCGGUgugUUCG- -5'
17506 5' -53.8 NC_004456.1 + 6729 0.68 0.564284
Target:  5'- -aCuCGAAGGCCGAAaGCCuucCugGAGCg -3'
miRNA:   3'- ucGcGUUUCCGGCUU-CGGu--GugUUCG- -5'
17506 5' -53.8 NC_004456.1 + 35464 0.68 0.575583
Target:  5'- --aGCAAuuGGCCGAGGCUgaaaagacccGCcaGCAAGCg -3'
miRNA:   3'- ucgCGUUu-CCGGCUUCGG----------UG--UGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 36562 0.68 0.586932
Target:  5'- cAGCGgGAA-GCCGuGGGCCAUACucAGCc -3'
miRNA:   3'- -UCGCgUUUcCGGC-UUCGGUGUGu-UCG- -5'
17506 5' -53.8 NC_004456.1 + 41022 0.67 0.608601
Target:  5'- aGGCGguAAGuaaagaaGCCGccGCCAUACAAcuGCa -3'
miRNA:   3'- -UCGCguUUC-------CGGCuuCGGUGUGUU--CG- -5'
17506 5' -53.8 NC_004456.1 + 17487 0.67 0.609744
Target:  5'- uAGCGC--AGGCCGuaauacccauGCUAaaacCGCAAGCa -3'
miRNA:   3'- -UCGCGuuUCCGGCuu--------CGGU----GUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 15389 0.67 0.609744
Target:  5'- cGCGC-AGGGCaucaccGGCCACACuGGUc -3'
miRNA:   3'- uCGCGuUUCCGgcu---UCGGUGUGuUCG- -5'
17506 5' -53.8 NC_004456.1 + 21860 0.67 0.609744
Target:  5'- aAGaUGCGAAcguGGCCGAGucauGCCGC-CAAGUg -3'
miRNA:   3'- -UC-GCGUUU---CCGGCUU----CGGUGuGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 15956 0.67 0.620041
Target:  5'- aGGUGCucgccauGAAGGCa-AGGCCACGacCGAGCu -3'
miRNA:   3'- -UCGCG-------UUUCCGgcUUCGGUGU--GUUCG- -5'
17506 5' -53.8 NC_004456.1 + 23178 0.67 0.621186
Target:  5'- gGGCGCAAGGGCgGuuuacuGAGCUGCugcgcCAAGa -3'
miRNA:   3'- -UCGCGUUUCCGgC------UUCGGUGu----GUUCg -5'
17506 5' -53.8 NC_004456.1 + 33594 0.67 0.621186
Target:  5'- aGGCGUucuu-UCGAcuuGGCCACACGGGCu -3'
miRNA:   3'- -UCGCGuuuccGGCU---UCGGUGUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.