Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 6218 | 0.69 | 0.498021 |
Target: 5'- uAGUuUAGGGGCCGAAcCCuuggaACGCAAGCa -3' miRNA: 3'- -UCGcGUUUCCGGCUUcGG-----UGUGUUCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 25108 | 0.7 | 0.445582 |
Target: 5'- uGGUGCucGAGGCCaaaauuaacGAuGCCACcCGAGCg -3' miRNA: 3'- -UCGCGu-UUCCGG---------CUuCGGUGuGUUCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 12136 | 0.71 | 0.396373 |
Target: 5'- cGGUugGCAGAGGCUGAAauGgCGgGCAAGCg -3' miRNA: 3'- -UCG--CGUUUCCGGCUU--CgGUgUGUUCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 20423 | 0.74 | 0.278513 |
Target: 5'- aGGCGuUGAAGGCUGGAuGCUuCACAGGCc -3' miRNA: 3'- -UCGC-GUUUCCGGCUU-CGGuGUGUUCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 24333 | 0.75 | 0.224667 |
Target: 5'- cGGCGCAccaccauuGAGGCCGAuuuuugcggcAGUCACAUccGCa -3' miRNA: 3'- -UCGCGU--------UUCCGGCU----------UCGGUGUGuuCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 37422 | 0.84 | 0.053835 |
Target: 5'- aGGCcaacuCAGAGGCCGcAGCCGCACGGGCu -3' miRNA: 3'- -UCGc----GUUUCCGGCuUCGGUGUGUUCG- -5' |
|||||||
17506 | 5' | -53.8 | NC_004456.1 | + | 20619 | 1.13 | 0.000472 |
Target: 5'- aAGCGCAAAGGCCGAAGCCACACAAGCg -3' miRNA: 3'- -UCGCGUUUCCGGCUUCGGUGUGUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home