miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17506 5' -53.8 NC_004456.1 + 6218 0.69 0.498021
Target:  5'- uAGUuUAGGGGCCGAAcCCuuggaACGCAAGCa -3'
miRNA:   3'- -UCGcGUUUCCGGCUUcGG-----UGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 25108 0.7 0.445582
Target:  5'- uGGUGCucGAGGCCaaaauuaacGAuGCCACcCGAGCg -3'
miRNA:   3'- -UCGCGu-UUCCGG---------CUuCGGUGuGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 12136 0.71 0.396373
Target:  5'- cGGUugGCAGAGGCUGAAauGgCGgGCAAGCg -3'
miRNA:   3'- -UCG--CGUUUCCGGCUU--CgGUgUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 20423 0.74 0.278513
Target:  5'- aGGCGuUGAAGGCUGGAuGCUuCACAGGCc -3'
miRNA:   3'- -UCGC-GUUUCCGGCUU-CGGuGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 24333 0.75 0.224667
Target:  5'- cGGCGCAccaccauuGAGGCCGAuuuuugcggcAGUCACAUccGCa -3'
miRNA:   3'- -UCGCGU--------UUCCGGCU----------UCGGUGUGuuCG- -5'
17506 5' -53.8 NC_004456.1 + 37422 0.84 0.053835
Target:  5'- aGGCcaacuCAGAGGCCGcAGCCGCACGGGCu -3'
miRNA:   3'- -UCGc----GUUUCCGGCuUCGGUGUGUUCG- -5'
17506 5' -53.8 NC_004456.1 + 20619 1.13 0.000472
Target:  5'- aAGCGCAAAGGCCGAAGCCACACAAGCg -3'
miRNA:   3'- -UCGCGUUUCCGGCUUCGGUGUGUUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.